--- MITgcm_contrib/MPMice/arctic36km/readme.txt	2013/11/11 19:07:01	1.1
+++ MITgcm_contrib/MPMice/arctic36km/readme.txt	2013/11/14 00:02:54	1.2
@@ -1,5 +1,4 @@
-Instructions for running arctic/cs_36km on spiral.math.unm.edu
-
+# Instructions for getting MITgcm code and data files
 mkdir Arctic36km
 cd Arctic36km
 cvs co MITgcm_code
@@ -7,8 +6,12 @@
 cvs co MITgcm_contrib/arctic/cs_36km
 ln -sf /homes/dmenemen/atmos/jra25 .
 ln -sf /homes/dmenemen/Arctic36km/run_template .
-
 mpd&
+
+############
+
+# Instructions for running uncoupled MITgcm
+# arctic/cs_36km on spiral.math.unm.edu
 cd MITgcm
 mkdir bin exe
 cd bin
@@ -17,10 +20,39 @@
 ../tools/genmake2 -mpi -of ../../MITgcm_contrib/MPMice/beaufort/code/linux_gfortran_spiral
 make depend
 make -j
-
 cd ../exe
 \ln -sf ../../jra25/* .
 \ln -sf ../../run_template/* .
 \cp ../../MITgcm_contrib/arctic/cs_36km/input/* .
 \cp ../bin/mitgcmuv .
 mpiexec -np 4 ./mitgcmuv < /dev/null &> output.txt &
+
+######################
+
+# Instructions for running coupled MPMice/MITgcm
+# arctic/cs_36km on spiral.math.unm.edu
+cd MITgcm
+mkdir bin
+cd bin
+\rm *
+\cp ../../MITgcm_contrib/MPMice/beaufort/code/* .
+\cp ../../MITgcm_contrib/arctic/cs_36km/code/* .
+\cp ../../MITgcm_contrib/MPMice/arctic36km/code/SIZE.h .
+\mv CPP_EEOPTIONS.h_CPL CPP_EEOPTIONS.h
+../tools/genmake2 -mpi -of ../../MITgcm_contrib/MPMice/beaufort/code/linux_gfortran_spiral
+make depend
+make -j
+cd ..
+mkdir ice
+cp ../../beaufort_020212/MITgcm/ice/* .
+cp /homes/hantran/2PM2/bin/PM2 .
+\rm out err a.out
+mkdir ocean
+cd ocean
+\rm *
+\ln -sf ../../jra25/* .
+\ln -sf ../../run_template/* .
+\cp ../../MITgcm_contrib/arctic/cs_36km/input/* .
+cd ..
+\cp bin/mitgcmuv .
+mpiexec -np 4 mitgcmuv : -np 1 PM2 &> a.out &