/[MITgcm]/MITgcm_contrib/MPMice/beaufort/README_beaufort.txt

Diff of /MITgcm_contrib/MPMice/beaufort/README_beaufort.txt

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-revision 1.1 by dimitri,
Sun May 31 13:25:42 2009 UTC
+revision 1.7 by dimitri,
Fri Feb  3 19:13:53 2012 UTC
 Line 1
  Instructions for running the "beaufort" 40x40x50 configuration
  face=6; ix=101:300; jx=290:449; kx=1:50;
-. Obtain copies of following directories:
+. Set up and log in to cvs server
-    (Note the forcing files span many years. To save time and space
+   bash or sh shell: export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-     you only need to download the years of interest from the
+   tcsh or csh shell: setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-     ncep_rgau and cube78_forcing directories)
+   cvs login ( enter the CVS password: "cvsanon" )
-  ftp://ecco2.jpl.nasa.gov/data1/beaufort/code
-  ftp://ecco2.jpl.nasa.gov/data1/beaufort/run_template
+. Get code, input, and README files from CVS server
-  ftp://ecco2.jpl.nasa.gov/data1/data/ncep/ncep_rgau
+   cvs co -d beaufort MITgcm_contrib/MPMice/beaufort
-  ftp://ecco2.jpl.nasa.gov/data1/data/blend_forcing/cube78_forcing
+   cd beaufort
+   cvs co MITgcm_code
-. Set up cvs server
-   bash or sh shell:
+. Obtain copies of following directories and put them in beaufort
-     export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
+   ftp://ecco2.jpl.nasa.gov/data1/beaufort/run_template
-   tcsh or csh shell:
+   ftp://ecco2.jpl.nasa.gov/data1/data/atmos/blend_forcing/cube78_forcing
-     setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
+    (Note the forcing files in cube78_forcing span many years.
+     To save time, you only need to download the years of interest,
-. Get code from cvs server
+     *92 for example below, plus the runoff-360x180x12.bin file)
-     cvs login
-       ( enter the CVS password: "cvsanon" )
-     cvs co MITgcm_code
-. Get the ice code, PM2
+. Get the ice code, PM2 (this item needs to be updated)
          Obtain directories PM2/F95 and PM2/config from ...??
          call the directory containting PM2, ICE_DIR,
          in my case ICE_DIR=/dm5/bep/sulsky/seaice on pollux
-                    ICE_DIR=/workg/bep/sulsky/seacie on gemini
+                    ICE_DIR=/workg/bep/sulsky/seaice on gemini
+  cp -r /workg/bep/sulsky/seaice ICE_DIR
+  cd ICE_DIR/PM2
+  make
+  ONCE ONLY: (only need to redo if geometry changes)
+  cd MITgcm/ice
+  mpirun -np 1 ICE_DIR/PM2-Pre
          The PM2/config/hosts files for gemini and pollux  assume petsc is installed in
                  PETSCDIR = /dm5/bep/sulsky/Packages/petsc-2.3.3-p8  on pollux
-Line 52 
 Running on a linux workstation:
+Line 57 
 Running on a linux workstation:
   cd bin
   ../tools/genmake2 -mods=../../code
   make depend
-  make -j
+  make -j 16
 . Model execution:
   cd ../exe
   cp ../../run_template/* .
+  cp ../../input/* .
   cp ../bin/mitgcmuv .
   ./mitgcmuv >& output.txt &
  =============================================
+ Running on lozenge.
+. Compile code:
+  cd MITgcm
+  mkdir bin exe
+  cd bin
+  \cp ../../code/* .
+  \mv SIZE.h_2 SIZE.h
+  ../tools/genmake2 -of ../../code/linux_amd64_gfortran_lozenge -mpi
+  make depend
+  make -j
+. Model execution:
+  cd ../exe
+  cp ../../run_template/* .
+  cp ../../input/* .
+  cp ../bin/mitgcmuv .
+  mpiexec -np 2 ./mitgcmuv >& output.txt
+ =============================================
+ Running MITgcm and MPMice on lozenge.
+. Compile code:
+  cd MITgcm
+  mkdir bin
+  cd bin
+  \rm *
+  \cp ../../code/* .
+  \mv SIZE.h_2 SIZE.h
+  \mv CPP_EEOPTIONS.h_CPL CPP_EEOPTIONS.h
+  ../tools/genmake2 -of ../../code/linux_amd64_gfortran_lozenge -mpi
+  make depend
+  make -j
+  cd ..
+  mkdir ice
+  cp ../../beaufort_020212/MITgcm/ice/* .
+  cp /homes/hantran/MPM_Han/PM2/bin/PM2 .
+. Model execution:
+  \rm out err a.out
+  mkdir ocean
+  cd ocean
+  \rm *
+  \cp ../../run_template/* .
+  \cp ../../input/* .
+  cd ..
+  \cp bin/mitgcmuv .
+  mpiexec -np 2 mitgcmuv : -np 1 PM2 > a.out &
+ =============================================
  Running on gemini.
 . Compile code:
-Line 76 
 Running on gemini.
+Line 133 
 Running on gemini.
 . Model execution:
   cd ../exe
   cp ../../run_template/* .
+  cp ../../input/* .
   cp ../bin/mitgcmuv .
-  bsub < jobfile
+  qsub jobfile
-  bjobs
+  qstat
  =============================================
  Running MITgcm and MPMice on gemini.
-Line 94 
 Running MITgcm and MPMice on gemini.
+Line 152 
 Running MITgcm and MPMice on gemini.
   ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_jpl
   make depend
   make -j
-  cd ICE_DIR
+  cd ..
-  make
+  cp -r /workg/bep/dmenemen/MITgcm/ice .
-  ONCE ONLY: (only need to redo if geometry changes)
-  cd MITgcm/ice
-  mpirun -np 1 ICE_DIR/PM2-Pre
-  cd MITgcm
 . Model execution:
-  cd ..
   \rm out err
   mkdir ocean
   cd ocean
   \rm *
-  cp ../../run_template/* .
+  \cp ../../run_template/* .
+  \cp ../../input/* .
   cd ..
-  cp -r ../ice .
+  \cp -r /workg/bep/dmenemen/MITgcm/ice .
   \cp bin/mitgcmuv .
   \cp ice/PM2 .
   bsub < ocean/jobfile2

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