| 1 |
jahn |
1.3 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/quota/quota_forcing.F,v 1.2 2012/07/02 09:47:43 benw Exp $ |
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jahn |
1.1 |
C $Name: $ |
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#include "CPP_OPTIONS.h" |
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#include "PTRACERS_OPTIONS.h" |
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#include "DARWIN_OPTIONS.h" |
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#ifdef ALLOW_PTRACERS |
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#ifdef ALLOW_DARWIN |
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#ifdef ALLOW_QUOTA |
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c============================================================= |
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c subroutine quota_forcing |
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c step forward bio-chemical tracers in time |
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C============================================================== |
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SUBROUTINE QUOTA_FORCING( |
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U Ptr, |
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I bi,bj,imin,imax,jmin,jmax, |
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I myTime,myIter,myThid) |
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#include "SIZE.h" |
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#include "EEPARAMS.h" |
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#include "PARAMS.h" |
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#include "GRID.h" |
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#include "PTRACERS_SIZE.h" |
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#include "PTRACERS_PARAMS.h" |
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#include "GCHEM.h" |
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#include "QUOTA_SIZE.h" |
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#include "QUOTA.h" |
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#include "DARWIN_IO.h" |
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#include "DYNVARS.h" |
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#ifdef USE_QSW |
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#include "FFIELDS.h" |
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#endif |
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C === Global variables === |
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c tracers |
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_RL Ptr(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr,nSx,nSy,nDarwin) |
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INTEGER bi,bj,imin,imax,jmin,jmax |
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_RL myTime |
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INTEGER myIter |
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INTEGER myThid |
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C============== Local variables ============================================ |
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c biomodel tracer arrays |
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_RL nutrient(iimax) |
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_RL biomass(iomax,npmax) |
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_RL orgmat(iomax-iChl,komax) |
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#ifdef FQUOTA |
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c iron partitioning |
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_RL freefe(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL freefu |
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_RL inputFel |
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#endif |
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c upstream arrays for sinking/swimming |
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_RL bioabove(iomax,npmax) |
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_RL biobelow(iomax,npmax) |
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_RL orgabove(iomax-iChl,komax) |
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c some working variables |
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_RL sumpy |
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_RL sumpyup |
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c light variables |
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_RL PAR(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL sfac(1-OLy:sNy+OLy) |
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_RL atten,lite |
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_RL newtime ! for sub-timestepping |
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_RL runtim ! time from tracer initialization |
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benw |
1.2 |
c |
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#ifdef ALLOW_DIAGNOSTICS |
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COJ for diagnostics |
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_RL PParr(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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#ifdef ALLOW_TIMEAVE |
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#ifdef QUOTA_DIAG_LIMIT |
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_RL Nlim(npmax) |
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_RL Flim(npmax) |
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_RL Ilim(npmax) |
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_RL Tlim |
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#endif |
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jahn |
1.1 |
#endif |
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c |
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c some local variables |
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_RL Tlocal |
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_RL Slocal |
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_RL PARlocal |
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_RL dzlocal |
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_RL dtplankton |
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_RL PP |
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c local tendencies |
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_RL dbiomass(iomax,npmax) |
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_RL dorgmat(iomax-iChl,komax) |
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_RL dnutrient(iimax) |
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_RL tmp |
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INTEGER bottom |
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INTEGER surface |
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benw |
1.2 |
INTEGER i,j,k,it,itmp,ktmp |
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jahn |
1.1 |
INTEGER ii,io,jp,ko, jp2, jpsave |
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INTEGER place |
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INTEGER debug |
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CHARACTER*8 diagname |
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c |
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c-------------------------------------------------- |
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benw |
1.2 |
c initialise variables |
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jahn |
1.1 |
DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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do k=1,Nr |
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#ifdef FQUOTA |
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freefe(i,j,k) = 0.0 _d 0 |
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# endif |
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PAR(i,j,k) = 0.0 _d 0 |
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benw |
1.2 |
#ifdef ALLOW_DIAGNOSTICS |
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COJ for diagnostics |
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PParr(i,j,k) = 0. _d 0 |
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jahn |
1.1 |
#endif |
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enddo !k |
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ENDDO !i |
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ENDDO !j |
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c |
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c bio-chemical time loop |
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c-------------------------------------------------- |
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DO it=1,nsubtime |
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c ------------------------------------------------- |
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COJ cannot use dfloat because of adjoint |
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COJ division will be double precision anyway because of dTtracerLev |
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newtime=myTime-dTtracerLev(1)+ |
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& float(it)*dTtracerLev(1)/float(nsubtime) |
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c print*,'it ',it,newtime,nsubtime,myTime |
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runtim=myTime-float(PTRACERS_Iter0)*dTtracerLev(1) |
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#ifdef FQUOTA |
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c determine iron partitioning - solve for free iron |
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call darwin_fe_chem(bi,bj,iMin,iMax,jMin,jMax, |
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& Ptr(1-OLx,1-OLy,1,bi,bj,iFeT), freefe, |
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& myIter, mythid) |
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#endif |
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c find light in each grid cell |
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c --------------------------- |
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c determine incident light |
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#ifndef READ_PAR |
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#ifdef USE_QSW |
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DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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sur_par(i,j,bi,bj)=-parfrac*Qsw(i,j,bi,bj)* |
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& parconv*maskC(i,j,1,bi,bj) |
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ENDDO |
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ENDDO |
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#else |
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DO j=1-OLy,sNy+OLy |
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sfac(j)=0. _d 0 |
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ENDDO |
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call darwin_insol(newTime,sfac,bj) |
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DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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sur_par(i,j,bi,bj)=sfac(j)*maskC(i,j,1,bi,bj)/86400. _d 6 |
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c if (i.eq.1.and.j.ge.1.and.j.le.sNy) |
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c & write(24,*) sur_par(i,j,bi,bj) |
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ENDDO |
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ENDDO |
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#endif |
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#endif |
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C................................................................. |
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C................................................................. |
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DO j=1,sNy |
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DO i=1,sNx |
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c surface PAR |
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c take ice coverage into account |
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#if (defined (ALLOW_SEAICE) && defined (USE_QSW)) |
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COJ ice coverage already taken into account by seaice package |
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lite=sur_par(i,j,bi,bj) |
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#else |
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#if (defined (ALLOW_SEAICE) && defined (USE_QSW)) |
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c if using Qsw and seaice, then ice fraction is already |
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c taken into account |
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lite=sur_par(i,j,bi,bj) |
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#else |
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lite=sur_par(i,j,bi,bj)*(1. _d 0-fice(i,j,bi,bj)) |
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#endif |
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#endif |
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atten = 0. _d 0 |
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sumpy = 0. _d 0 |
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c |
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c FOR EACH LAYER ... |
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do k= 1, NR |
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if (HFacC(i,j,k,bi,bj).gt.0. _d 0) then |
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c --------------------------------------------------------------------- |
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c benw |
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c |
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c Fetch biomodel variables from ptr (ptracers) |
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c (making sure they are .ge. 0 - brute force) |
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c |
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c (set biomodel tendencies to zero, at the same time) |
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c |
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c ********************************************************************* |
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place = 0 |
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c Inorganic Nutrients |
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do ii=1,iimax |
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place = place + 1 |
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c ambient nutrients for each element (1 to iimax) |
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nutrient(ii) = max(Ptr(i,j,k,bi,bj,place),0. _d 0) |
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dnutrient(ii) = 0. _d 0 |
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enddo ! ii |
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c ********************************************************************* |
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benw |
1.2 |
c Unicellular biomass (including chlorophyll biomass - for non-grazers) |
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jahn |
1.1 |
do io=1,iomax |
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do jp=1,npmax |
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benw |
1.2 |
if (io.ne.iChlo.or.pft(jp).ne.6) then ! no grazer chlorophyll |
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place = place + 1 |
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biomass(io,jp) = max(Ptr(i,j,k,bi,bj,place),0. _d 0) |
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jahn |
1.1 |
! biomasses above current layer for sinking |
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benw |
1.2 |
if (k.eq.1) then |
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bioabove(io,jp)=0. _d 0 |
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endif |
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jahn |
1.1 |
! biomasses below current layer for swimming |
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benw |
1.2 |
if (k.eq.Nr) then |
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biobelow(io,jp)=0. _d 0 |
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elseif (hFacC(i,j,k+1,bi,bj).eq.0. _d 0) then |
| 223 |
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biobelow(io,jp)=0. _d 0 |
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else |
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biobelow(io,jp)=max(Ptr(i,j,k+1,bi,bj,place),0. _d 0) |
| 226 |
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endif |
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! initialise biomass rate of change |
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dbiomass(io,jp) = 0. _d 0 |
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else ! if grazer, fill chl biomass with zeros |
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biomass(io,jp) = 0. _d 0 |
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jahn |
1.1 |
endif |
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enddo ! jp |
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enddo |
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c ********************************************************************* |
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c Organic matter |
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do io=1,iomax-iChl |
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do ko=1,komax |
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c mass of element x for all OM classes |
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place = place + 1 |
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orgmat(io,ko) = max(Ptr(i,j,k,bi,bj,place),0. _d 0) |
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! biomasses above current layer for sinking |
| 242 |
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if (k.eq.1) then |
| 243 |
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orgabove(io,ko) = 0. _d 0 |
| 244 |
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endif |
| 245 |
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#ifdef SQUOTA |
| 246 |
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if (ko.and.1.and.io.eq.iSili) then |
| 247 |
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place = place - 1 |
| 248 |
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orgmat(iSili,1) = 0. _d 0 |
| 249 |
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orgabove(iSili,1) = 0. _d 0 |
| 250 |
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endif |
| 251 |
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#endif |
| 252 |
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dorgmat(io,ko) = 0. _d 0 |
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enddo ! ko |
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enddo ! io |
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c ********************************************************************* |
| 256 |
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c |
| 257 |
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c --------------------------------------------------------------------- |
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| 260 |
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c find local light for level k |
| 261 |
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sumpyup = sumpy |
| 262 |
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sumpy = 0. _d 0 |
| 263 |
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do jp=1,npmax |
| 264 |
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#ifndef GEIDER |
| 265 |
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! sum nitrogen biomass |
| 266 |
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sumpy = sumpy + biomass(iNitr,jp) |
| 267 |
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#else |
| 268 |
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! sum chlorophyll |
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sumpy = sumpy + biomass(iChlo,jp) |
| 270 |
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#endif |
| 271 |
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enddo |
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| 273 |
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atten= atten + (k_w + k_chl*sumpy)*5. _d -1*drF(k) |
| 274 |
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if (k.gt.1)then |
| 275 |
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atten = atten + (k_w+k_chl*sumpyup)*5. _d -1*drF(k-1) |
| 276 |
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endif |
| 277 |
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PAR(i,j,k) = lite*exp(-atten) |
| 278 |
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c |
| 279 |
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c Physical variables |
| 280 |
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PARlocal = PAR(i,j,k) |
| 281 |
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Tlocal = theta(i,j,k,bi,bj) |
| 282 |
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Slocal = salt(i,j,k,bi,bj) |
| 283 |
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c Free Iron |
| 284 |
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#ifdef FQUOTA |
| 285 |
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freefu = max(freefe(i,j,k),0. _d 0) |
| 286 |
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if (k.eq.1) then |
| 287 |
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inputFel = inputFe(i,j,bi,bj) |
| 288 |
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else |
| 289 |
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inputFel = 0. _d 0 |
| 290 |
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endif |
| 291 |
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#endif |
| 292 |
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c Layer thickness |
| 293 |
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dzlocal = drF(k)*HFacC(i,j,k,bi,bj) |
| 294 |
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c |
| 295 |
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c set bottom=1.0 if the layer below is not ocean |
| 296 |
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ktmp=min(nR,k+1) |
| 297 |
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if(hFacC(i,j,ktmp,bi,bj).eq.0. _d 0.or.k.eq.Nr) then |
| 298 |
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bottom = 1 |
| 299 |
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else |
| 300 |
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bottom = 0 |
| 301 |
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endif |
| 302 |
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if (k.eq.1) then |
| 303 |
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surface = 1 |
| 304 |
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else |
| 305 |
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surface = 0 |
| 306 |
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endif |
| 307 |
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| 308 |
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c set other arguments to zero |
| 309 |
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debug=0 |
| 310 |
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| 311 |
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if (debug.eq.7) print*,'Inorganic nutrients',nutrient |
| 312 |
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if (debug.eq.7) print*,'Plankton biomass', biomass |
| 313 |
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if (debug.eq.7) print*,'Organic nutrients',orgmat |
| 314 |
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if (debug.eq.8) print*,'k, PARlocal, dzlocal', |
| 315 |
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& k,PARlocal,dzlocal |
| 316 |
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c --------------------------------------------------------------------- |
| 317 |
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CALL QUOTA_PLANKTON( |
| 318 |
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I biomass, orgmat, nutrient, |
| 319 |
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O PP, |
| 320 |
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I bioabove, biobelow, |
| 321 |
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I orgabove, |
| 322 |
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#ifdef FQUOTA |
| 323 |
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I freefu, inputFel, |
| 324 |
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#endif |
| 325 |
benw |
1.2 |
#ifdef ALLOW_TIMEAVE |
| 326 |
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#ifdef QUOTA_DIAG_LIMIT |
| 327 |
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O Nlim, Flim, Ilim, Tlim, |
| 328 |
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#endif |
| 329 |
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#endif |
| 330 |
jahn |
1.1 |
I PARlocal, Tlocal, Slocal, |
| 331 |
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I bottom, surface, dzlocal, |
| 332 |
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O dbiomass, dorgmat, dnutrient, |
| 333 |
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I debug, |
| 334 |
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I runtim, |
| 335 |
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I MyThid) |
| 336 |
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c --------------------------------------------------------------------- |
| 337 |
benw |
1.2 |
#ifdef FQUOTA |
| 338 |
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#ifdef IRON_SED_SOURCE |
| 339 |
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c only above minimum depth (continental shelf) |
| 340 |
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if (rF(k).lt.depthfesed) then |
| 341 |
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c only if bottom layer |
| 342 |
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if (HFacC(i,j,k+1,bi,bj).eq.0. _d 0) then |
| 343 |
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#ifdef IRON_SED_SOURCE_VARIABLE |
| 344 |
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c calculate sink of POC into bottom layer |
| 345 |
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tmp=orgsink(2)*orgabove(iCarb,2)/dzlocal |
| 346 |
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c convert to dPOCl |
| 347 |
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dnutrient(iFeT) = dnutrient(iFeT) |
| 348 |
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& + fesedflux_pcm*tmp |
| 349 |
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#else |
| 350 |
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dnutrient(iFeT) = dnutrient(iFeT) |
| 351 |
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& + fesedflux/(drF(k)*hFacC(i,j,k,bi,bj)) |
| 352 |
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#endif |
| 353 |
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endif |
| 354 |
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endif |
| 355 |
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#endif |
| 356 |
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#endif |
| 357 |
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c --------------------------------------------------------------------- |
| 358 |
jahn |
1.1 |
c save un-updated biomass as layer above |
| 359 |
|
|
do io=1,iomax |
| 360 |
|
|
do jp=1,npmax |
| 361 |
|
|
bioabove(io,jp)=biomass(io,jp) |
| 362 |
|
|
enddo |
| 363 |
|
|
if (io.ne.iChlo) then |
| 364 |
|
|
do ko=1,komax |
| 365 |
|
|
orgabove(io,ko)=orgmat(io,ko) |
| 366 |
|
|
enddo |
| 367 |
|
|
endif |
| 368 |
|
|
enddo |
| 369 |
|
|
c --------------------------------------------------------------------- |
| 370 |
|
|
c now update main tracer arrays |
| 371 |
|
|
c for timestep dtplankton |
| 372 |
|
|
dtplankton = dTtracerLev(k)/float(nsubtime) |
| 373 |
|
|
cccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 374 |
|
|
place = 0 |
| 375 |
|
|
cccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 376 |
|
|
c Inorganic nutrients |
| 377 |
|
|
do ii=1,iimax |
| 378 |
|
|
place = place + 1 |
| 379 |
|
|
Ptr(i,j,k,bi,bj,place) = Ptr(i,j,k,bi,bj,place) |
| 380 |
|
|
& + dtplankton*dnutrient(ii) |
| 381 |
|
|
enddo ! ii |
| 382 |
|
|
cccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 383 |
|
|
c Biomass |
| 384 |
|
|
do io=1,iomax |
| 385 |
|
|
do jp=1,npmax |
| 386 |
benw |
1.2 |
if (io.ne.iChlo.or.pft(jp).ne.6) then ! if not a grazer |
| 387 |
|
|
place = place + 1 |
| 388 |
|
|
Ptr(i,j,k,bi,bj,place) = Ptr(i,j,k,bi,bj,place) |
| 389 |
|
|
& + dtplankton*dbiomass(io,jp) |
| 390 |
|
|
if (pft(jp).eq.6.and.io.eq.iChlo) then |
| 391 |
|
|
Ptr(i,j,k,bi,bj,place) = 0. _d 0 |
| 392 |
|
|
endif |
| 393 |
jahn |
1.1 |
endif |
| 394 |
|
|
enddo ! jp |
| 395 |
|
|
enddo ! io |
| 396 |
|
|
ccccccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 397 |
|
|
c Organic matter |
| 398 |
|
|
do io=1,iomax-iChl |
| 399 |
|
|
do ko=1,komax |
| 400 |
|
|
if (ko.ne.1.or.io.ne.iSili) then |
| 401 |
|
|
place = place + 1 |
| 402 |
|
|
Ptr(i,j,k,bi,bj,place) = Ptr(i,j,k,bi,bj,place) |
| 403 |
|
|
& + dtplankton*dorgmat(io,ko) |
| 404 |
|
|
endif |
| 405 |
|
|
enddo ! ko |
| 406 |
|
|
enddo ! io |
| 407 |
|
|
ccccccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 408 |
|
|
c |
| 409 |
benw |
1.2 |
#ifdef ALLOW_DIAGNOSTICS |
| 410 |
|
|
COJ for diagnostics |
| 411 |
|
|
PParr(i,j,k) = PP |
| 412 |
|
|
#endif /* ALLOW_DIAGNOSTICS */ |
| 413 |
|
|
|
| 414 |
jahn |
1.1 |
#ifdef ALLOW_TIMEAVE |
| 415 |
benw |
1.2 |
PPave(i,j,k,bi,bj) = PPave(i,j,k,bi,bj) |
| 416 |
|
|
& + PP * dtplankton |
| 417 |
|
|
PARave(i,j,k,bi,bj) = PARave(i,j,k,bi,bj) |
| 418 |
|
|
& + PARlocal * dtplankton |
| 419 |
jahn |
1.1 |
c |
| 420 |
benw |
1.2 |
#ifdef QUOTA_DIAG_LIMIT |
| 421 |
|
|
do jp=1,npmax |
| 422 |
|
|
Nlimave(i,j,k,bi,bj,jp) = Nlimave(i,j,k,bi,bj,jp) |
| 423 |
|
|
& + Nlim(jp) * dtplankton |
| 424 |
|
|
Flimave(i,j,k,bi,bj,jp) = Flimave(i,j,k,bi,bj,jp) |
| 425 |
|
|
& + Flim(jp) * dtplankton |
| 426 |
|
|
Ilimave(i,j,k,bi,bj,jp) = Ilimave(i,j,k,bi,bj,jp) |
| 427 |
|
|
& + Ilim(jp) * dtplankton |
| 428 |
|
|
enddo |
| 429 |
|
|
Tlimave(i,j,k,bi,bj) = Tlimave(i,j,k,bi,bj) |
| 430 |
|
|
& + Tlim * dtplankton |
| 431 |
jahn |
1.1 |
#endif |
| 432 |
|
|
#endif |
| 433 |
|
|
endif |
| 434 |
|
|
c end if hFac>0 |
| 435 |
|
|
enddo ! k |
| 436 |
|
|
c end layer loop |
| 437 |
|
|
c |
| 438 |
|
|
ENDDO ! i |
| 439 |
|
|
ENDDO ! j |
| 440 |
|
|
c |
| 441 |
|
|
c |
| 442 |
|
|
COJ fill diagnostics |
| 443 |
|
|
#ifdef ALLOW_DIAGNOSTICS |
| 444 |
|
|
IF ( useDiagnostics ) THEN |
| 445 |
benw |
1.2 |
diagname = 'PP ' |
| 446 |
|
|
CALL DIAGNOSTICS_FILL( PParr(1-Olx,1-Oly,1), diagname, |
| 447 |
jahn |
1.1 |
& 0,Nr,2,bi,bj,myThid ) |
| 448 |
|
|
ENDIF |
| 449 |
|
|
#endif |
| 450 |
|
|
COJ |
| 451 |
|
|
|
| 452 |
|
|
#ifdef FQUOTA |
| 453 |
|
|
c determine iron partitioning - solve for free iron |
| 454 |
|
|
call darwin_fe_chem(bi,bj,iMin,iMax,jMin,jMax, |
| 455 |
|
|
& Ptr(1-OLx,1-OLy,1,bi,bj,iFeT), freefe, |
| 456 |
|
|
& myIter, mythid) |
| 457 |
|
|
#endif |
| 458 |
|
|
|
| 459 |
|
|
c |
| 460 |
|
|
#ifdef ALLOW_TIMEAVE |
| 461 |
|
|
c save averages |
| 462 |
jahn |
1.3 |
dar_timeave(bi,bj) = dar_timeave(bi,bj) + dtplankton |
| 463 |
jahn |
1.1 |
#endif |
| 464 |
|
|
c |
| 465 |
|
|
c ----------------------------------------------------- |
| 466 |
|
|
ENDDO ! it |
| 467 |
|
|
c ----------------------------------------------------- |
| 468 |
|
|
c end of bio-chemical time loop |
| 469 |
|
|
c |
| 470 |
|
|
RETURN |
| 471 |
|
|
END |
| 472 |
|
|
|
| 473 |
|
|
#endif /*ALLOW_QUOTA*/ |
| 474 |
|
|
#endif /*ALLOW_DARWIN*/ |
| 475 |
|
|
#endif /*ALLOW_PTRACERS*/ |
| 476 |
|
|
|
| 477 |
|
|
C============================================================================ |
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