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revision 1.1 by dimitri, Tue Jan 14 00:34:16 2020 UTC revision 1.2 by dimitri, Mon Jan 27 02:52:07 2020 UTC
# Line 1  Line 1 
1  # Diagnostic Package Choices  # Diagnostic Package Choices
2  #--------------------  #-----------------
3  #  dumpAtLast (logical): always write output at the end of simulation (default=F)  # for each output-stream:
4  #  diag_mnc   (logical): write to NetCDF files (default=useMNC)  #  filename(n) : prefix of the output file name (only 8.c long) for outp.stream n
5  #--for each output-stream:  #  frequency(n):< 0 : write snap-shot output every multiple of |frequency| (iter)
6  #  fileName(n) : prefix of the output file name (max 80c long) for outp.stream n  #               > 0 : write time-average output every multiple of frequency (iter)
 #  frequency(n):< 0 : write snap-shot output every |frequency| seconds  
 #               > 0 : write time-average output every frequency seconds  
 #  timePhase(n)     : write at time = timePhase + multiple of |frequency|  
 #    averagingFreq  : frequency (in s) for periodic averaging interval  
 #    averagingPhase : phase     (in s) for periodic averaging interval  
 #    repeatCycle    : number of averaging intervals in 1 cycle  
7  #  levels(:,n) : list of levels to write to file (Notes: declared as REAL)  #  levels(:,n) : list of levels to write to file (Notes: declared as REAL)
8  #                when this entry is missing, select all common levels of this list  #                 when this entry is missing, select all common levels of this list
9  #  fields(:,n) : list of selected diagnostics fields (8.c) in outp.stream n  #  fields(:,n) : list of diagnostics fields (8.c) (see "available_diagnostics" file
10  #                (see "available_diagnostics.log" file for the full list of diags)  #                 for the list of all available diag. in this particular config)
11  #  missing_value(n) : missing value for real-type fields in output file "n"  #--------------------------------------------------------------------
12  #  fileFlags(n)     : specific code (8c string) for output file "n"  #
13  #--------------------  # 6-hourly 2-D fields:
14   &DIAGNOSTICS_LIST  # ====================
15    fields(1:10,1) = 'ETAN    ','ETANSQ  ','DETADT2 ','PHIBOT  ','PHIBOTSQ',  #
16                     'DICTFLX ','DICOFLX ','DICCFLX ','DICPCO2 ','DICPHAV ',  # ETAN     Perturbation of Surface (pressure, height) (Pa,m)
17     levels(1,1) = 1.,  # PHIBOT   ocean bottom pressure / top. atmos geo-Potential
18     fileName(1) = 'surfDiag',  # oceTAUX  zonal surface wind stress, >0 increases uVel (N/m^2)
19    frequency(1) = 432000.,  # oceTAUY  meridional surf. wind stress, >0 increases vVel (N/m^2)
20    frequency(1) = 172800.,  # surForcT model surface forcing for Temperature, >0 increases theta (W/m^2)
21    fields(1:18,2) = 'UVEL    ','VVEL    ','WVEL    ','PHIHYD  ',  # oceQsw   net Short-Wave radiation (+=down), >0 increases theta (W/m^2)
22                     'UVELMASS','VVELMASS',  # surForcS model surface forcing for Salinity, >0 increases salinity (g/m^2/s)
23                     'UVELSQ  ','VVELSQ  ','UV_VEL_C','THETASQ ',  # KPPhbl   KPP boundary layer depth, bulk Ri criterion
24                     'THETA   ','UTHMASS ','VTHMASS ','WVELTH  ',  # KPPmld   Mixed layer depth, dT=.8degC density criterion
25                     'SALT    ','USLTMASS','VSLTMASS','WVELSLT ',  # SSS      Sea Surface Salinity (g/kg)
26  #  fileName(2) = 'dynDiag',  # SST      Sea Surface Temperature (degC,K)
27    frequency(2) = 0.,  # UVEL_k2  Zonal Component of Velocity at level 2 (m/s)
28    fields(1:5,3)  = 'DICBIOA ','DICCARB ',  # VVEL_k2  Meridional Component of Velocity at level 2 (m/s)
29                     'TRAC05  ','ADVxTr05','DFrITr05',  #
30  #  fileName(3) = 'dicDiag',  # daily 2-D fields:
31    frequency(3) = 172800.,  # =================
32    fields(1:8,4)  = 'ADVx_TH ','ADVy_TH ','ADVr_TH ',  #
33                     'DFxE_TH ','DFyE_TH ','DFrE_TH ',  # SIarea   SEAICE fractional ice-covered area [0 to 1]
34                     'DFrI_TH ',  # SIheff   SEAICE effective ice thickness (m)
35                     'ADVx_SLT',  # SIuice   SEAICE zonal ice velocity, >0 from West to East (m/s)
36  #  fileName(4) = 'flxDiag',  # SIvice   SEAICE merid. ice velocity, >0 from South to North (m/s)
37    frequency(4) = 0.,  # SIhsnow  SEAICE snow thickness (m)
38    # SIhsalt  SEAICE effective salinity (g/m^2)
39    #
40    # monthly 2-D fields:
41    # ===================
42    #
43    # ETANSQ   Square of Perturbation of Sfc (Pa2,m2)
44    # EXFhs    Sensible heat flux into ocean, >0 increases theta (W/m^2)
45    # EXFhl    Latent heat flux into ocean, >0 increases theta (W/m^2)
46    # EXFlwnet Net upward longwave radiation, >0 decreases theta (W/m^2)
47    # oceFWflx net surface Fresh-Water flux into ocean, >0 decreases salinity (kg/m^2/s)
48    # oceSflux net surface Salt flux into the ocean, >0 increases salinity (g/m^2/s)
49    # oceQnet  net surface heat flux into the ocean, >0 increases theta (W/m^2)
50    # SRELAX   surface salinity relaxation, >0 increases salt (g/m^2/s)
51    # TFLUX    total heat flux (match heat-content variations), >0 increases theta (W/m^2)
52    # SFLUX    total salt flux (match salt-content variations), >0 increases salt (g/m^2/s)
53    #
54    # monthly 3-D fields:
55    # ===================
56    #
57    # SALTanom Salt anomaly (=SALT-35; g/kg)
58    # THETA    Potential Temperature (degC,K)
59    # UVELMASS Zonal Mass-Weighted Comp of Velocity (m/s)
60    # VVELMASS Meridional Mass-Weighted Comp of Velocity (m/s)
61    # WVELMASS Vertical Mass-Weighted Comp of Velocity (m/s)
62    #
63    # SALTSQan Square of Salt anomaly (=(SALT-35)^2 (g^2/kg^2)
64    # THETASQ  Square of Potential Temperature (K2)
65    # UVELSQ   Square of Zonal Comp of Velocity (m2/s2)
66    # VVELSQ   Square of Meridional Comp of Velocity (m2/s2)
67    # WVELSQ   Square of Vertical Comp of Velocity (m2/s2)
68    # UV_VEL_Z Meridional Transport of Zonal Momentum (m2/s2)
69    # WU_VEL   Vertical Transport of Zonal Momentum (m^2/s^2)
70    # WV_VEL   Vertical Transport of Meridional Momentum (m^2/s^2)
71    #
72    # UTHMASS  Zonal Mass-Weight Transp of Pot Temp (K.m/s)
73    # VTHMASS  Meridional Mass-Weight Transp of Pot Temp (K.m/s)
74    # WTHMASS  Vertical Mass-Weight Transp of Pot Temp (K.m/s)
75    # USLTMASS Zonal Mass-Weight Transp of Salt (g/kg.m/s)
76    # VSLTMASS Meridional Mass-Weight Transp of Salt (g/kg.m/s)
77    # WSLTMASS Vertical Mass-Weight Transp of Salt (g/kg.m/s)
78    #
79    # RHOAnoma Density Anomaly (=Rho-rhoConst; kg/m^3)
80    # DRHODR   Stratification: d.Sigma/dr (kg/m3/r_unit; kg/m^4)
81    # RHOANOSQ Square of Density Anomaly (=(Rho-rhoConst)^2; kg^2/m^6)
82    # URHOMASS Zonal Transport of Density (kg/m^2/s)
83    # VRHOMASS Meridional Transport of Density (kg/m^2/s)
84    # WRHOMASS Vertical Transport of Potential Density (kg/m^2/s)
85    #
86     &diagnostics_list
87      frequency(1)  = -2635200.,
88       timePhase(1) = 0.,
89       fields(1,1)  = 'ETAN    ',
90       filename(1)  = 'ETAN',
91      frequency(2) = 2635200.,
92       fields(1,2) = 'SALTanom',
93       filename(2) = 'SALTanom',
94      frequency(3) = 2635200.,
95       fields(1,3) = 'THETA   ',
96       filename(3) = 'THETA',
97      frequency(4) = 2635200.,
98       fields(1,4) = 'TRAC32  ',
99       filename(4) = 'DIC',
100      frequency(5) = 86400.,
101       fields(1,5) = 'DICTFLX ',
102       filename(5) = 'DICTFLX',
103      frequency(6) = 86400.,
104       fields(1,6) = 'DICOFLX ',
105       filename(6) = 'DICOFLX',
106      frequency(7) = 86400.,
107       fields(1,7) = 'DICCFLX ',
108       filename(7) = 'DICCFLX',
109      frequency(8) = 86400.,
110       fields(1,8) = 'DICPCO2 ',
111       filename(8) = 'DICPCO2',
112      frequency(9) = 86400.,
113       fields(1,9) = 'DICPHAV ',
114       filename(9) = 'DICPHAV',
115      frequency(10) = 2635200.,
116       fields(1,10) = 'TRAC01  ',
117       filename(10) = 'PO4',
118      frequency(11) = 2635200.,
119       fields(1,11) = 'TRAC02  ',
120       filename(11) = 'NO3',
121      frequency(12) = 2635200.,
122       fields(1,12) = 'TRAC03  ',
123       filename(12) = 'FeT',
124      frequency(13) = 2635200.,
125       fields(1,13) = 'TRAC04  ',
126       filename(13) = 'SiO2',
127      frequency(14) = 2635200.,
128       fields(1,14) = 'TRAC05  ',
129       filename(14) = 'DOP',
130      frequency(15) = 2635200.,
131       fields(1,15) = 'TRAC06  ',
132       filename(15) = 'DON',
133      frequency(16) = 2635200.,
134       fields(1,16) = 'TRAC07  ',
135       filename(16) = 'DOFe',
136      frequency(17) = 2635200.,
137       fields(1,17) = 'TRAC08  ',
138       filename(17) = 'ZOO1P',
139      frequency(18) = 2635200.,
140       fields(1,18) = 'TRAC09  ',
141       filename(18) = 'ZOO1N',
142      frequency(19) = 2635200.,
143       fields(1,19) = 'TRAC10  ',
144       filename(19) = 'ZOO1Fe',
145      frequency(20) = 2635200.,
146       fields(1,20) = 'TRAC11  ',
147       filename(20) = 'ZOO1Si',
148      frequency(21) = 2635200.,
149       fields(1,21) = 'TRAC12  ',
150       filename(21) = 'ZOO2P',
151      frequency(22) = 2635200.,
152       fields(1,22) = 'TRAC13  ',
153       filename(22) = 'ZOO2N',
154      frequency(23) = 2635200.,
155       fields(1,23) = 'TRAC14  ',
156       filename(23) = 'ZOO2Fe',
157      frequency(24) = 2635200.,
158       fields(1,24) = 'TRAC15  ',
159       filename(24) = 'ZOO2Si',
160      frequency(25) = 2635200.,
161       fields(1,25) = 'TRAC16  ',
162       filename(25) = 'POP',
163      frequency(26) = 2635200.,
164       fields(1,26) = 'TRAC17  ',
165       filename(26) = 'PON',
166      frequency(27) = 2635200.,
167       fields(1,27) = 'TRAC18  ',
168       filename(27) = 'POFe',
169      frequency(28) = 2635200.,
170       fields(1,28) = 'TRAC19  ',
171       filename(28) = 'POSi',
172      frequency(29) = 2635200.,
173       fields(1,29) = 'TRAC20  ',
174       filename(29) = 'NH4',
175      frequency(30) = 2635200.,
176       fields(1,30) = 'TRAC21  ',
177       filename(30) = 'NO2',
178      frequency(31) = 2635200.,
179       fields(1,31) = 'TRAC22  ',
180       filename(31) = 'Phy01',
181      frequency(32) = 2635200.,
182       fields(1,32) = 'TRAC23  ',
183       filename(32) = 'Phy02',
184      frequency(33) = 2635200.,
185       fields(1,33) = 'TRAC24  ',
186       filename(33) = 'Phy03',
187      frequency(34) = 2635200.,
188       fields(1,34) = 'TRAC25  ',
189       filename(34) = 'Phy04',
190      frequency(35) = 2635200.,
191       fields(1,35) = 'TRAC26  ',
192       filename(35) = 'Phy05',
193      frequency(36) = 2635200.,
194       fields(1,36) = 'TRAC33  ',
195       filename(36) = 'DOC',
196      frequency(37) = 2635200.,
197       fields(1,37) = 'TRAC34  ',
198       filename(37) = 'POC',
199      frequency(38) = 2635200.,
200       fields(1,38) = 'TRAC35  ',
201       filename(38) = 'PIC',
202      frequency(39) = 2635200.,
203       fields(1,39) = 'TRAC36  ',
204       filename(39) = 'ALK',
205      frequency(40) = 2635200.,
206       fields(1,40) = 'TRAC37  ',
207       filename(40) = 'O2',
208      frequency(41) = 2635200.,
209       fields(1,41) = 'TRAC38  ',
210       filename(41) = 'ZOOC1',
211      frequency(42) = 2635200.,
212       fields(1,42) = 'TRAC39  ',
213       filename(42) = 'ZOOC2',
214      frequency(43) = 2635200.,
215       fields(1,43) = 'TRAC27  ',
216       filename(43) = 'CHL1',
217      frequency(44) = 2635200.,
218       fields(1,44) = 'TRAC28  ',
219       filename(44) = 'CHL2',
220      frequency(45) = 2635200.,
221       fields(1,45) = 'TRAC29  ',
222       filename(45) = 'CHL3',
223      frequency(46) = 2635200.,
224       fields(1,46) = 'TRAC30  ',
225       filename(46) = 'CHL4',
226      frequency(47) = 2635200.,
227       fields(1,47) = 'TRAC31  ',
228       filename(47) = 'CHL5',
229      frequency(48) = 86400.,
230       fields(1,48) = 'EXFwspee ',
231       filename(48) = 'EXFwspee',
232      frequency(49)  = 2635200.,
233       fields(1,49)  = 'PAR    ',
234       filename(49)  = 'PAR',
235      frequency(50)  = 2635200.,
236       fields(1,50)  = 'PP',
237       filename(50)  = 'PP',
238      frequency(51) = 2635200.,
239       fields(1,51) = 'SIarea ',
240       filename(51) = 'SIarea_month',
241      frequency(52) = 2635200.,
242       fields(1,52) = 'SIheff ',
243       filename(52) = 'SIheff_month',
244      frequency(53) = 2635200.,
245       fields(1,53) = 'EXFapco2 ',
246       filename(53) = 'EXFapco2month',
247      frequency(54) = -2535200.,
248       fields(1,54) = 'EXFapco2 ',
249       timePhase(54) = 0.,
250       filename(54) = 'EXFapco2snap',
251      
252      frequency(55) = 10800.,
253       fields(1,55) = 'DICCFLX ',
254       filename(55) = 'DICCFLX3hrly',
255      frequency(56) = 2635200.,
256       fields(1,56) = 'DICFGCO2',
257       filename(56) = 'DICFGCO2',
258      frequency(57) = 2635200.,
259       fields(1,57) = 'UE_VEL_C',
260       filename(57) = 'UE_VEL_C',
261      frequency(58) = 2635200.,
262       fields(1,58) = 'VN_VEL_C',
263       filename(58) = 'VN_VEL_C',
264      frequency(59) = 2635200.,
265       fields(1,59) = 'WVEL     ',
266       filename(59) = 'WVEL',
267      frequency(60) = 2635200.,
268       fields(1,60) = 'DICCFLX  ',
269       filename(60) = 'DICCFLXmonth',
270      frequency(61) = 2635200.,
271       fields(1,61) = 'DICPCO2  ',
272       filename(61) = 'DICPCO2month',
273      frequency(62) = 2635200.,
274       fields(1,62) = 'DICOFLX ',
275       filename(62) = 'DICOFLX_month',
276     frequency(63) = 2635200.,
277       fields(1,63) = 'oceQsw  ',
278       filename(63) = 'oceQswMonth',
279     frequency(64) = 2635200.,
280       fields(1,64) = 'oceQnet ',
281       filename(64) = 'oceQnetMonth',
282     frequency(65) = 2635200.,
283       fields(1,65) = 'EXFwspee ',
284       filename(65) = 'EXFwspeeMonth',
285    
286      filename(66) = 'surfDiag',
287       frequency(66) = 2635200.,
288       levels(1,66) = 1.,
289       fields(1,66) = 'TFLUX   ','SFLUX   ','MXLDEPTH','oceFWflx ','oceQsw  ',
290    
291      filename(67) = 'velMassDiag',
292       frequency(67) = 2635200.,
293       fields(1,67) = 'UVELMASS ','VVELMASS ','WVELMASS ',
294    
295      filename(68) = 'dic_surfDiag',
296       frequency(68) = 2635200.,
297       levels(1,68) = 1.,
298    #   timePhase(68) = 0.,
299       fields(1,68) = 'DICCFLX ','DICTFLX ',
300      
301      filename(69) = 'theta_flxDiag',
302       frequency(69) = 2635200.,
303       fields(1,69) = 'THETA   ','TOTTTEND',
304                      'ADVx_TH ','ADVy_TH ','ADVr_TH ',
305                      'DFxE_TH ','DFyE_TH ','DFrE_TH ','DFrI_TH ',
306      
307      filename(70) = 'salt_flxDiag',
308       frequency(70) = 2635200.,
309       fields(1,70) = 'SALT    ','TOTSTEND',
310                      'ADVx_SLT','ADVy_SLT','ADVr_SLT',
311                      'DFxE_SLT','DFyE_SLT','DFrE_SLT','DFrI_SLT','oceSPtnd',
312      
313      filename(71) = 'dic_flxDiag',
314       frequency(71) = 2635200.,
315       fields(1,71) = 'TRAC32  ',
316                      'ADVxTr32','ADVyTr32','ADVrTr32',
317                      'DFxETr32','DFyETr32','DFrETr32','DFrITr32',
318      
319      filename(72) = 'alk_flxDiag',
320       frequency(72) = 2635200.,
321       fields(1,72) = 'TRAC36  ',
322                      'ADVxTr36','ADVyTr36','ADVrTr36',
323                      'DFxETr36','DFyETr36','DFrETr36','DFrITr36',
324      
325      filename(73) = 'po4_flxDiag',
326       frequency(73) = 2635200.,
327       fields(1,73) = 'TRAC01  ',
328                      'ADVxTr01','ADVyTr01','ADVrTr01',
329                      'DFxETr01','DFyETr01','DFrETr01','DFrITr01',
330    
331      filename(74) = 'snapDiag',
332       frequency(74) = -2635200.,
333       timePhase(74) = 0.,
334       fields(1,74) = 'THETA   ','SALT    ','TRAC32  ','TRAC36  ','TRAC01  ',
335   &   &
336    
 #--------------------  
337  # Parameter for Diagnostics of per level statistics:  # Parameter for Diagnostics of per level statistics:
338  #--------------------  #-----------------
339  #  diagSt_mnc (logical): write stat-diags to NetCDF files (default=diag_mnc)  # for each output-stream:
340  #  diagSt_regMaskFile : file containing the region-mask to read-in  #  stat_fname(n) : prefix of the output file name (only 8.c long) for
341  #  nSetRegMskFile   : number of region-mask sets within the region-mask file  #outp.stream n
 #  set_regMask(i)   : region-mask set-index that identifies the region "i"  
 #  val_regMask(i)   : region "i" identifier value in the region mask  
 #--for each output-stream:  
 #  stat_fName(n) : prefix of the output file name (max 80c long) for outp.stream n  
342  #  stat_freq(n):< 0 : write snap-shot output every |stat_freq| seconds  #  stat_freq(n):< 0 : write snap-shot output every |stat_freq| seconds
343  #               > 0 : write time-average output every stat_freq seconds  #               > 0 : write time-average output every stat_freq seconds
344  #  stat_phase(n)    : write at time = stat_phase + multiple of |stat_freq|  #  stat_phase(n)    : write at time = stat_phase + multiple of |stat_freq|
345  #  stat_region(:,n) : list of "regions" (default: 1 region only=global)  #  stat_region(:,n) : list of "regions" (default: 1 region only=global)
346  #  stat_fields(:,n) : list of selected diagnostics fields (8.c) in outp.stream n  #  stat_fields(:,n) : list of diagnostics fields (8.c) (see
347  #                (see "available_diagnostics.log" file for the full list of diags)  #"available_diagnostics.log"
348  #--------------------  #                 file for the list of all available diag. in this particular
349    #config)
350    #-----------------
351   &DIAG_STATIS_PARMS   &DIAG_STATIS_PARMS
352  #- an example just to check the agreement with MONITOR output:  #- an example just to check the agreement with MONITOR output:
353  #stat_fields(1:5,1)  = 'ETAN    ','UVEL    ','VVEL    ','WVEL    ', 'THETA   ',  #stat_fields(1,1)= 'ETAN    ','UVEL    ','VVEL    ','WVEL    ', 'THETA   ',
354  # stat_fName(1) = 'dynStDiag',  #   stat_fname(1)= 'dynStDiag',
355  #  stat_freq(1) = -864000.,  #    stat_freq(1)= -864000.,
356  # stat_phase(1) = 0.,  #   stat_phase(1)= 0.,
357   &   &
   

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