/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_llc270/readme_darwin.txt
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revision 1.1 by dimitri, Fri Dec 1 19:02:10 2017 UTC revision 1.12 by dimitri, Fri May 3 14:22:35 2019 UTC
# Line 1  Line 1 
1    ==============
2  # Build executable for ECCO-Darwin version 4  # Build executable for ECCO-Darwin version 4
3  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_code  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
 cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/darwin/pkg/darwin  
4  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270
5    cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
6  cd MITgcm/pkg  cd MITgcm/pkg
7  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
8  cd ..  cd ..
9  mkdir build  mkdir build
10  cd build  cd build
 cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin/packages.conf .  
11  module purge  module purge
12  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
13  ../tools/genmake2 -of \  ../tools/genmake2 -of \
# Line 18  make -j 16 Line 18  make -j 16
18    
19    
20  ==============  ==============
21  # Instructions for running forward-only llc270 optimized solution (2001-2015)  # Instructions for running ECCO-Darwin Version 4 for 1992-2018 period
22  cd ..  cd ..
23  mkdir run  mkdir run
24  cd run  cd run
25  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
26  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .  ln -sf /nobackupp2/dmenemen/public/llc_270/iter42/input/* .
27  ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .  ln -sf /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input/* .
28  ln -sf /nobackup/hzhang1/forcing/era_xx .  ln -sf /nobackup/hzhang1/forcing/era_xx .
29  ln -sf /nobackup/hzhang1/obs/input/pickup* .  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .
30  ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/* .
 ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .  
 ln -sf /nobackup/hzhang1/obs/input/tile* .  
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .  
 ln -sf /nobackup/hzhang1/obs/optim33/xx_* .  
31  # modify job_llc270_fdH as needed  # modify job_llc270_fdH as needed
32  qsub job_llc270_fdH  qsub job_llc270_fdH
33    
34    
35  ==============  ==============
36  # Instructions for running forward-only llc270 optimized solution (2009-2015)  # Creating input directory for ECCO-Darwin version 4
37  cd ..  mkdir /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
38  mkdir run  cd /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
39  cd run  cp /nobackup/dcarrol2/temp/pickup_ptracers_optimized.0000000001.data pickup_ptracers.0000000001.data
40  ln -sf ../build/mitgcmuv .  cp /nobackup/dcarrol2/temp/pickup_ptracers.0000210384.meta pickup_ptracers.0000000001.meta
41  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .  cp /nobackup/dcarrol2/forcing/apCO2/* .
42  cp data_2009 data  cp /nobackup/dcarrol2/temp/llc270_Mahowald_2009_soluble_iron_dust.bin .
 cp data.ctrl_2009 data.ctrl  
 ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .  
 ln -sf /nobackup/hzhang1/forcing/era_xx .  
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/20090101/pickup* .  
 ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .  
 ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .  
 ln -sf /nobackup/hzhang1/obs/input/tile* .  
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .  
 ln -sf /nobackup/hzhang1/obs/optim33/xx_* .  
 # modify job_llc270_fdH as needed  
 qsub job_llc270_fdH  
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