/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_llc270/readme_darwin.txt
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revision 1.1 by dimitri, Fri Dec 1 19:02:10 2017 UTC revision 1.7 by dimitri, Thu Mar 21 05:36:01 2019 UTC
# Line 1  Line 1 
1  # Build executable for ECCO-Darwin version 4  # Build executable for ECCO-Darwin version 4
2  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_code  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
3  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/darwin/pkg/darwin  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
4  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270
5  cd MITgcm/pkg  cd MITgcm/pkg
6  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
7  cd ..  cd ..
8  mkdir build  mkdir build
9  cd build  cd build
 cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin/packages.conf .  
10  module purge  module purge
11  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
12  ../tools/genmake2 -of \  ../tools/genmake2 -of \
# Line 18  make -j 16 Line 17  make -j 16
17    
18    
19  ==============  ==============
20  # Instructions for running forward-only llc270 optimized solution (2001-2015)  # Instructions for running ECCO-Darwin Version 4 for 2009-2015 period
21  cd ..  cd ..
22  mkdir run  mkdir run
23  cd run  cd run
24  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
25  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .
26    cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/* .
27    cp data_2009 data
28    cp data.ctrl_2009 data.ctrl
29  ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .  ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .
30  ln -sf /nobackup/hzhang1/forcing/era_xx .  ln -sf /nobackup/hzhang1/forcing/era_xx .
31  ln -sf /nobackup/hzhang1/obs/input/pickup* .  ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/20090101/pickup* .
32  ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .  ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .
33  ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .  ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .
34  ln -sf /nobackup/hzhang1/obs/input/tile* .  ln -sf /nobackup/hzhang1/obs/input/tile* .
35  ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .  ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .
36  ln -sf /nobackup/hzhang1/obs/optim33/xx_* .  ln -sf /nobackup/hzhang1/obs/optim33/xx_* .
37    ln -sf /nobackup/hbrix/ICBC/pco2a_blended_* .
38    ln -sf pco2a_blended_2012 pco2a_blended_2013
39    ln -sf pco2a_blended_2012 pco2a_blended_2014
40    ln -sf pco2a_blended_2012 pco2a_blended_2015
41    ln -sf pco2a_blended_2012 pco2a_blended_2016
42    ln -sf ~dmenemen/CMS/run_template_cg1/darwin* .
43    ln -sf /nobackup/dcarrol2/temp/pickup_llc270_dic.gf_cg1.0000078912.data pickup_dic.0000210384.data
44    ln -sf /nobackup/dcarrol2/temp/pickup_llc270_ptracers.gf_cg1.0000078912.data pickup_ptracers.0000210384.data
45    ln -sf /nobackup/dcarrol2/temp/pickup*.meta .
46    ln -sf /nobackup/dcarrol2/forcing/iron_dust/llc270_Mahowald_2009_soluble_iron_dust.bin
47  # modify job_llc270_fdH as needed  # modify job_llc270_fdH as needed
48  qsub job_llc270_fdH  qsub job_llc270_fdH
49    
   
50  ==============  ==============
51  # Instructions for running forward-only llc270 optimized solution (2009-2015)  # Instructions for running ECCO-Darwin Version 4 for 1992-2015 period
52  cd ..  cd ..
53  mkdir run  mkdir run
54  cd run  cd run
55  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
 cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .  
 cp data_2009 data  
 cp data.ctrl_2009 data.ctrl  
56  ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .  ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .
57  ln -sf /nobackup/hzhang1/forcing/era_xx .  ln -sf /nobackup/hzhang1/forcing/era_xx .
58  ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/20090101/pickup* .  ln -sf /nobackup/hzhang1/obs/input/pickup* .
59  ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .  ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .
60  ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .  ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .
61  ln -sf /nobackup/hzhang1/obs/input/tile* .  ln -sf /nobackup/hzhang1/obs/input/tile* .
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .  
62  ln -sf /nobackup/hzhang1/obs/optim33/xx_* .  ln -sf /nobackup/hzhang1/obs/optim33/xx_* .
63    cp -sf /nobackup/hzhang1/pub/llc270_FWD/input/* .
64    cp -sf /nobackup/hzhang1/pub/llc270_FWD/input/19920101/* .
65    cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .
66    cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/* .
67    ln -sf ~dmenemen/CMS/run_template_cg1/darwin* .
68    ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/19920101/pickup.0000000001.meta pickup.0000000001.meta
69    ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/19920101/pickup.0000000001.data pickup.0000000001.data
70    ln -sf /nobackup/dcarrol2/temp/pickup_llc270_ptracers.gf_cg1.0000078912.data pickup_ptracers.0000000001.data
71    ln -sf /nobackup/dcarrol2/temp/pickup_ptracers.0000210384.meta pickup_ptracers.0000000001.meta
72    ln -sf /nobackup/dcarrol2/temp/pickup_llc270_dic.gf_cg1.0000078912.data pickup_dic.0000000001.data
73    ln -sf /nobackup/dcarrol2/temp/pickup_dic.0000210384.meta pickup_dic.0000000001.meta
74    ln -sf /nobackup/dcarrol2/forcing/apCO2/apCO2* .
75    ln -sf /nobackup/dcarrol2/forcing/iron_dust/llc270_Mahowald_2009_soluble_iron_dust.bin
76  # modify job_llc270_fdH as needed  # modify job_llc270_fdH as needed
77  qsub job_llc270_fdH  qsub job_llc270_fdH
78    
79    
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