/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_llc270/readme_darwin.txt
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revision 1.2 by dimitri, Fri Dec 1 21:19:03 2017 UTC revision 1.10 by dimitri, Tue Apr 23 07:01:03 2019 UTC
# Line 1  Line 1 
1    ==============
2  # Build executable for ECCO-Darwin version 4  # Build executable for ECCO-Darwin version 4
3  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_code  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
 cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/darwin/pkg/darwin  
4  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270
5    cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
6  cd MITgcm/pkg  cd MITgcm/pkg
7  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .  ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
8  cd ..  cd ..
# Line 10  cd build Line 11  cd build
11  module purge  module purge
12  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
13  ../tools/genmake2 -of \  ../tools/genmake2 -of \
14    ../../MITgcm_contrib/ecco_darwin/v4_llc270/code/linux_amd64_ifort+mpi_ice_nas \    ../../MITgcm_contrib/ecco_darwin/v4_llc270/code/linux_amd64_ifort+mpi_ice_nas -mo \
15    -mo ../../MITgcm_contrib/ecco_darwin/v4_llc270/code \    '../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
   -mo ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin  
16  make depend  make depend
17  make -j 16  make -j 16
18    
19    
20  ==============  ==============
21  # Instructions for running ECCO-Darwin Version 4 for 2009-2015 period  # Instructions for running ECCO-Darwin Version 4 for 1992-2018 period
22  cd ..  cd ..
23  mkdir run  mkdir run
24  cd run  cd run
25  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
26    ln -sf /nobackupp2/dmenemen/llc_270/iter42/input/* .
27    ln -sf /nobackupp2/dmenemen/llc_270/ecco_darwin_v4/input/* .
28    ln -sf /nobackup/hzhang1/forcing/era_xx .
29  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/* .
30  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/* .  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/* .
 cp data_2009 data  
 cp data.ctrl_2009 data.ctrl  
 ln -sf /nobackup/hzhang1/obs/input/bathy270_filled_noCaspian_r4 .  
 ln -sf /nobackup/hzhang1/forcing/era_xx .  
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/20090101/pickup* .  
 ln -sf /nobackup/hzhang1/obs/input/runoff-2d-Fekete-1deg-mon-V4-SMOOTH.bin .  
 ln -sf /nobackup/hzhang1/obs/pri_err/smooth* .  
 ln -sf /nobackup/hzhang1/obs/input/tile* .  
 ln -sf /nobackup/hzhang1/pub/llc270_FWD/input/w*data .  
 ln -sf /nobackup/hzhang1/obs/optim33/xx_* .  
 ln -sf /nobackup/hbrix/ICBC/pco2a_blended_* .  
 ln -sf pco2a_blended_2012 pco2a_blended_2013  
 ln -sf pco2a_blended_2012 pco2a_blended_2014  
 ln -sf pco2a_blended_2012 pco2a_blended_2015  
 ln -sf pco2a_blended_2012 pco2a_blended_2016  
 ln -sf ~dmenemen/CMS/run_template_cg1/darwin* .  
 ln -sf /nobackup/dcarrol2/temp/pickup_llc270_dic.gf_cg1.0000078912.data pickup_dic.0000078912.data  
 ln -sf /nobackup/dcarrol2/temp/pickup_llc270_ptracers.gf_cg1.0000078912.data pickup_ptracers.0000078912.data  
 ln -sf /nobackup/dcarrol2/temp/pickup*.meta .  
 ln -sf /nobackup/hzhang1/cs510/ICBC_2009/pickup*.0000000001.??ta .  
 ln -sf /nobackup/dmenemen/forcing/runoff/runoff-360x180x12.bin .  
 ln -sf /nobackup/hzhang1/cs510/run_template/tile00* .  
31  # modify job_llc270_fdH as needed  # modify job_llc270_fdH as needed
32  qsub job_llc270_fdH  qsub job_llc270_fdH
33    
34    
35    ==============
36    # Creating input directory for ECCO-Darwin version 4
37    mkdir /nobackupp2/dmenemen/llc_270/ecco_darwin_v4
38    mkdir /nobackupp2/dmenemen/llc_270/ecco_darwin_v4/input
39    cd /nobackupp2/dmenemen/llc_270/ecco_darwin_v4/input
40    cp /nobackup/dcarrol2/temp/pickup_ptracers_optimized.0000000001.data pickup_ptracers.0000000001.data
41    cp /nobackup/dcarrol2/temp/pickup_dic_optimized.0000000001.data pickup_dic.0000000001.data
42    cp /nobackup/dcarrol2/temp/pickup_ptracers.0000210384.meta pickup_ptracers.0000000001.meta
43    cp /nobackup/dcarrol2/temp/pickup_dic.0000210384.meta pickup_dic.0000000001.meta
44    cp /nobackup/dcarrol2/forcing/apCO2/* .
45    cp /nobackup/dcarrol2/temp/llc270_Mahowald_2009_soluble_iron_dust.bin .
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