--- MITgcm_contrib/high_res_cube/README.cs510	2007/11/06 18:45:23	1.29
+++ MITgcm_contrib/high_res_cube/README.cs510	2009/06/30 22:58:37	1.45
@@ -1,13 +1,32 @@
 Instructions for setting up a cube-sphere integration with sea-ice.
 
-Forcing fields and other input files needed for the CS510
-configuration can be obtained from
-http://ecco2.org/products/model_setups/cs510.html
-
 =================
 
 UPDATES
 
+June 30, 2009.  Cube86 -same as cube85 but with:
+   1. updated Southern OCean Bathymetry
+   2. ice shelf cavities
+
+June 16, 2009. Cube85 -same as cube84 but with:
+   1. split north/south data.seaice parameters from regional optimizations
+   2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
+   3. initialize from T/S/U/V/ETAN and sea ice files
+   4. 3-day 3D diagnostics
+   5. SEAICE_no_slip=.TRUE. to keep code stable
+
+June 13, 2008. Cube 81 - same as cube79 but with
+   1. new values for data.seaice and data.exf
+   2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
+   3. GMRedi turned off
+
+December 22, 2007. Cube80 - same as cube79 but with
+   SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
+   ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
+   ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
+December 2, 2007. Cube79 - same as cube78 (blend3) but with
+   useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
+November 22, 2007. Cube 78 - blend 3
 November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
                             and era40_ecmwf_blend/cube59_GPCP forcing
 November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
@@ -27,30 +46,18 @@
 
 ##########################################################################
 # Get forcing files, etc.
-# Example below is for cube77 on /nobackup2a/menemenl
+# Example below is for cube86 on /nobackup2a/menemenl
 
-cd /nobackup2a/menemenl
-mkdir cube77
-cd cube77
+cd /nobackup2a/menemenl/cs510
+mkdir cube86
+cd cube86
 ln -sf ../run_template .
-ln -sf ../cube59_GPCP .
-ln -sf ../cube59_GPCP .
-ln -sf ../era40_ecmwf_blend .
-ln -sf ../ncep_rgau .
+ln -sf ../../forcing/cube78_forcing .
+
 
 ##########################################################################
 # getting the code from anonymous CVS server
 
-  bash or sh shell:
-    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
-  tcsh or csh shell:
-    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
 cvs co MITgcm_contrib/high_res_cube/README.cs510
 cvs co MITgcm_contrib/high_res_cube/code-mods
 cvs co MITgcm_contrib/high_res_cube/input
@@ -65,48 +72,18 @@
 cd build
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
-\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
-\cp SIZE.h_216 SIZE.h
-../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas
+\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h 
+../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 make depend
-make -j
+make -j 8
 cd ../run
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/input/* .
-ln -sf ../../run_template/* .
-\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*JAN*
+\ln -sf ../../run_template/* .
+\rm *192_94* *.m heff_* pickup* A* D* E* G*all.bin L* P* W*
+\mv data.seaice_hr data.seaice
 \mv data.exf_hr data.exf
 \mv data_hr data
-ln -sf ../../run_template/pickup.0000000216.cube75 pickup.0000000216
-ln -sf ../../run_template/pickup_seaice.0000000216.cube76 pickup_seaice.0000000216
-ln -sf ../../run_template/pickup.0000000216.meta .
-ln -sf ../../run_template/pickup_seaice.0000000216.meta .
 \cp ../build/mitgcmuv .
-\mv job_altix cube77
-qsub cube77
-
-
-##########################################################################
-# generating initial pickup files for cube74
-
-data.cal
-# start on December 30 because of bug that does
-# not allow a January 1, hour 0 start
- startDate_1=19881230,
-
-data
-# run for 4 days with 2-min time step
- niter0=0,
- endtime=345600.,
- deltaT=120.,
- pChkptFreq=345600.,
- monitorFreq=1.,
-
-data.seaice
-# set SEAICE_salinity to 33 to avoid initialization schock if
-# ice is created or melts during first time step
-      HeffFile           = 'heff_file8',
-      SEAICE_salinity    = 33.,
-
-\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube74
-\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube74
+\mv job_altix cube86
+qsub cube86