--- MITgcm_contrib/high_res_cube/README.cs510	2008/07/02 16:50:34	1.41
+++ MITgcm_contrib/high_res_cube/README.cs510	2009/06/16 20:57:45	1.42
@@ -1,18 +1,19 @@
 Instructions for setting up a cube-sphere integration with sea-ice.
 
-Forcing fields and other input files needed for the CS510
-configuration can be obtained from
-http://ecco2.org/products/model_setups/cs510.html
-
 =================
 
 UPDATES
 
+June 16, 2009. Cube85 -same as cube84 but with:
+   1. split north/south data.seaice parameters from regional optimizations
+   2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
+   3. initialize from T/S/U/V/ETAN and sea ice files
+   4. 3-day 3D diagnostics
+
 June 13, 2008. Cube 81 - same as cube79 but with
-   1. salt plume package turned on
-   2. new values for data.seaice and data.exf
-   3. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
-   4. GMRedi turned off
+   1. new values for data.seaice and data.exf
+   2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
+   3. GMRedi turned off
 
 December 22, 2007. Cube80 - same as cube79 but with
    SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
@@ -40,29 +41,18 @@
 
 ##########################################################################
 # Get forcing files, etc.
-# Example below is for cube81 on /nobackup2a/menemenl
+# Example below is for cube85 on /nobackup2a/menemenl
 
 cd /nobackup2a/menemenl
-mkdir cube81
-cd cube81
+mkdir cube84
+cd cube84
 ln -sf ../run_template .
 ln -sf ../cube78_forcing .
-ln -sf ../ncep_rgau/ .
 
 
 ##########################################################################
 # getting the code from anonymous CVS server
 
-  bash or sh shell:
-    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
-  tcsh or csh shell:
-    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
 cvs co MITgcm_contrib/high_res_cube/README.cs510
 cvs co MITgcm_contrib/high_res_cube/code-mods
 cvs co MITgcm_contrib/high_res_cube/input
@@ -77,49 +67,18 @@
 cd build
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
-\cp ../../MITgcm_contrib/high_res_cube/code-mods/s1350t_34x34/* .
-\mv SIZE.h_450 SIZE.h 
+\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h 
 ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 make depend
-make -j
+make -j 8
 cd ../run
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/input/* .
 ln -sf ../../run_template/* .
 \rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC*
+\mv data.seaice_hr data.seaice
 \mv data.exf_hr data.exf
 \mv data_hr data
-ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
-ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
-ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
-ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
 \cp ../build/mitgcmuv .
-\mv job_altix cube81
-qsub cube81
-
-
-##########################################################################
-# generating initial pickup files for cube78
-
-data
-# run for 4 days from time step 216 with 2-min time step
- endtime=345600.,
- deltaT=120.,
- pChkptFreq=345600.,
- monitorFreq=1.,
-
-cd ../../run_template
-mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw
-mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw
-cd ../cube78/MITgcm/run
-\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78
-\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78
-\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78
-\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78
-\rm *.meta *.data STD* cube78.o*
-\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data
-ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216
-ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
-ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta
-ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta
-qsub cube78
+\mv job_altix cube85
+qsub cube85