--- MITgcm_contrib/high_res_cube/README.cs510	2007/04/11 01:22:02	1.5
+++ MITgcm_contrib/high_res_cube/README.cs510	2009/06/18 18:29:51	1.43
@@ -1,42 +1,59 @@
 Instructions for setting up a cube-sphere integration with sea-ice.
 
-Forcing fields and other input files needed for the CS510
-configuration can be obtained from
-http://ecco2.org/products/model_setups/cs510.html
-
 =================
 
 UPDATES
 
-April 10, 2007: preparing for cube65, Bryan and Lewis 1979 diffusivity
-April 7 , 2007: preparing for cube64, era40_fullres forcing
+June 16, 2009. Cube85 -same as cube84 but with:
+   1. split north/south data.seaice parameters from regional optimizations
+   2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally
+   3. initialize from T/S/U/V/ETAN and sea ice files
+   4. 3-day 3D diagnostics
+   5. SEAICE_no_slip=.TRUE. to keep code stable
+
+June 13, 2008. Cube 81 - same as cube79 but with
+   1. new values for data.seaice and data.exf
+   2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic
+   3. GMRedi turned off
+
+December 22, 2007. Cube80 - same as cube79 but with
+   SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea)
+   ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis
+   ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis
+December 2, 2007. Cube79 - same as cube78 (blend3) but with
+   useRelativeWind=.TRUE. and SEAICE_gamma_t=259200
+November 22, 2007. Cube 78 - blend 3
+November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY
+                            and era40_ecmwf_blend/cube59_GPCP forcing
+November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration
+August 31, 2007.  Cube75 - the second blend.
+August 9, 2007. Cube74
+August 6, 2007. Cube73
+July 24, 2007. Cube72
+July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT,
+   rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6
+   useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10
+   bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8
+   SEAICE_availHeatFrac=.5, useGMRedi=.TRUE.
+April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity
+   (cube67, cube68, and cube69 were carried out with cube65 code)
+April 7 , 2007. Cube64: era40_fullres forcing
 
 
 ##########################################################################
 # Get forcing files, etc.
-# Example below is for cube46 on /nobackup2a/menemenl
+# Example below is for cube85 on /nobackup2a/menemenl
 
 cd /nobackup2a/menemenl
-mkdir cube65
-cd cube65
+mkdir cube85
+cd cube85
 ln -sf ../run_template .
-ln -sf ../ncep_rgau .
-ln -sf ../era40_fullres .
+ln -sf ../../forcing/cube78_forcing .
 
 
 ##########################################################################
 # getting the code from anonymous CVS server
 
-  bash or sh shell:
-    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
-  tcsh or csh shell:
-    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
-    $ cvs login 
-      ( enter the CVS password: "cvsanon" )
-
 cvs co MITgcm_contrib/high_res_cube/README.cs510
 cvs co MITgcm_contrib/high_res_cube/code-mods
 cvs co MITgcm_contrib/high_res_cube/input
@@ -44,25 +61,25 @@
 
 
 ##########################################################################
-# 510*510*6*50, 216-cpu cube sphere on altix with ifort
+# 510*510*6*50, 450-cpu cube sphere on altix with ifort
 
 cd MITgcm
 mkdir build run
 cd build
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
-\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
-\cp SIZE.h_216 SIZE.h
-\cp packages.conf_hr packages.conf
-../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas
+\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h 
+../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 make depend
-make -j
+make -j 8
 cd ../run
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/input/* .
-ln -sf ../../run_template/* .
-\rm pickup* data.pkg data.seaice data.exf_clim data.exf data *192_94* *.m LEV*JAN*
-ln -sf ../../run_template/pickup.0000000216.cube49 pickup.0000000216
-ln -sf ../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
+\ln -sf ../../run_template/* .
+\rm *192_94* *.m heff_* pickup* A* D* E* G*all.bin L* P* W*
+\mv data.seaice_hr data.seaice
+\mv data.exf_hr data.exf
+\mv data_hr data
 \cp ../build/mitgcmuv .
-qsub job_altix
+\mv job_altix cube85
+qsub cube85