--- MITgcm_contrib/high_res_cube/README.cs510 2007/11/23 15:54:00 1.32 +++ MITgcm_contrib/high_res_cube/README.cs510 2010/07/28 22:48:02 1.49 @@ -1,14 +1,41 @@ Instructions for setting up a cube-sphere integration with sea-ice. -Forcing fields and other input files needed for the CS510 -configuration can be obtained from -http://ecco2.org/products/model_setups/cs510.html - ================= UPDATES -November 22, 2007. Cube 78 - blend 3 test +July 27, 2010. Cube88 on pleiades - same as cube84 but with: + 1. JRA25 instead of cube84 blend forcing + 2. useSALT_PLUME = .TRUE., (off in Southern Ocean) + 3. useDOWN_SLOPE = .TRUE., + 4. split north/south data.sec17saice parameters from regional optimizations + 5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup + 6. 3-day 3D diagnostics + 7. SEAICE_no_slip = .TRUE. to keep code stable + +June 30, 2009. Cube86 -same as cube85 but with: + 1. updated Southern OCean Bathymetry + 2. ice shelf cavities + +June 16, 2009. Cube85 -same as cube84 but with: + 1. split north/south data.seaice parameters from regional optimizations + 2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally + 3. initialize from T/S/U/V/ETAN and sea ice files + 4. 3-day 3D diagnostics + 5. SEAICE_no_slip=.TRUE. to keep code stable + +June 13, 2008. Cube 81 - same as cube79 but with + 1. new values for data.seaice and data.exf + 2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic + 3. GMRedi turned off + +December 22, 2007. Cube80 - same as cube79 but with + SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) + ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis + ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis +December 2, 2007. Cube79 - same as cube78 (blend3) but with + useRelativeWind=.TRUE. and SEAICE_gamma_t=259200 +November 22, 2007. Cube 78 - blend 3 November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY and era40_ecmwf_blend/cube59_GPCP forcing November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration @@ -28,27 +55,18 @@ ########################################################################## # Get forcing files, etc. -# Example below is for cube78 on /nobackup2a/menemenl +# Example below is for cube88 on pleiades + +mkdir cube88 +cd cube88 +ln -sf /nobackupp10/hzhang1/cs510/run_template . +ln -sf /nobackupp10/hzhang1/forcing/jra25 . +ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing . -cd /nobackup2a/menemenl -mkdir cube78 -cd cube78 -ln -sf ../run_template . -ln -sf ../cube78_forcing . ########################################################################## # getting the code from anonymous CVS server - bash or sh shell: - $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' - $ cvs login - ( enter the CVS password: "cvsanon" ) - - tcsh or csh shell: - $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' - $ cvs login - ( enter the CVS password: "cvsanon" ) - cvs co MITgcm_contrib/high_res_cube/README.cs510 cvs co MITgcm_contrib/high_res_cube/code-mods cvs co MITgcm_contrib/high_res_cube/input @@ -56,56 +74,28 @@ ########################################################################## -# 510*510*6*50, 216-cpu cube sphere on altix with ifort +# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort cd MITgcm mkdir build run cd build \rm * \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . -\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . -\cp SIZE.h_216 SIZE.h -../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas +\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h . +\rm README SIZE.h_mpi rotate_en_to_uv.F +../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas make depend -make -j +make -j 16 cd ../run \rm * -\cp ../../MITgcm_contrib/high_res_cube/input/* . -ln -sf ../../run_template/* . -\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* +\cp ../../MITgcm_contrib/high_res_cube/input/*data* . +\cp ../../MITgcm_contrib/high_res_cube/input/modpickup . +\cp ../../MITgcm_contrib/high_res_cube/input/job* . +\mv data.seaice_hr data.seaice \mv data.exf_hr data.exf \mv data_hr data -ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 -ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 -ln -sf ../../run_template/pickup.0000000216.meta . -ln -sf ../../run_template/pickup_seaice.0000000216.meta . +\ln -sf ../../run_template/tile* . +\ln -sf ../../run_template/G*dig* . +\ln -sf ../../run_template/*Init.cube78 . \cp ../build/mitgcmuv . -\mv job_altix cube78 -qsub cube78 - - -########################################################################## -# generating initial pickup files for cube78 - -data -# run for 4 days from time step 216 with 2-min time step - endtime=345600., - deltaT=120., - pChkptFreq=345600., - monitorFreq=1., - -cd ../../run_template -mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw -mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw -cd ../cube78/MITgcm/run -\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 -\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 -\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 -\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 -\rm *.meta *.data STD* cube78.o* -\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data -ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 -ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 -ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta -ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta -qsub cube78 +qsub job_cs510_pleiades450