--- MITgcm_contrib/high_res_cube/README.cs510	2010/08/19 14:31:58	1.50
+++ MITgcm_contrib/high_res_cube/README.cs510	2012/03/19 20:31:59	1.51
@@ -1,9 +1,68 @@
 Instructions for setting up a cube-sphere integration with sea-ice.
 
+##########################################################################
+# Get forcing files, etc.
+# Example below is for cube88 on pleiades
+
+mkdir cube94
+cd cube94
+ln -sf /nobackupp10/hzhang1/cs510/run_template .
+ln -sf /nobackupp10/hzhang1/forcing/jra25 .
+ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
+
+
+##########################################################################
+# getting the code from anonymous CVS server
+
+cvs co MITgcm_contrib/high_res_cube/README.cs510
+cvs co MITgcm_contrib/high_res_cube/code-mods
+cvs co MITgcm_contrib/high_res_cube/input
+cvs co MITgcm_code
+
+
+##########################################################################
+# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
+
+cd MITgcm
+mkdir build run
+cd build
+\rm *
+\cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
+\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
+\rm README SIZE.h_mpi
+../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
+make depend
+make -j 16
+cd ../run
+\rm *
+\cp ../../MITgcm_contrib/high_res_cube/input/*data* .
+\cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
+\cp ../../MITgcm_contrib/high_res_cube/input/job* .
+\mv data.seaice_hr data.seaice
+\mv data.exf_hr data.exf
+\mv data_hr data
+\ln -sf ../../run_template/tile* .
+\ln -sf ../../run_template/G*dig* .
+\ln -sf ../../run_template/*Init.cube78 .
+\cp ../build/mitgcmuv .
+qsub job_cs510_pleiades450
+
 =================
 
 UPDATES
 
+March 19, 2012. Cube94 on pleiades
+This integration is driven by JRA25 (as was cube92)
+but it includes shelfice (as did cube86),
+it is based on MITgcm > checkpoint63k (that is post ICE workshop code),
+it uses optimized Arctic sea ice parameters from
+http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice
+http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf
+it uses Southern Ocean ice and ice shelf parameters from JSO24
+/data14/scratch/hzhang/CP/JSO24/input
+(bathymetry and initial conditions tbd),
+and it uses pkg/bbl and frazil instead of down_slope
+
 July 27, 2010.  Cube88 on pleiades - same as cube84 but with:
    1. JRA25 instead of cube84 blend forcing
    2. useSALT_PLUME  = .TRUE., (off in Southern Ocean)
@@ -52,50 +111,43 @@
    (cube67, cube68, and cube69 were carried out with cube65 code)
 April 7 , 2007. Cube64: era40_fullres forcing
 
+February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
 
-##########################################################################
-# Get forcing files, etc.
-# Example below is for cube88 on pleiades
+February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
+                  removed UVEL and VVEL from diagnostics
 
-mkdir cube88
-cd cube88
-ln -sf /nobackupp10/hzhang1/cs510/run_template .
-ln -sf /nobackupp10/hzhang1/forcing/jra25 .
-ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing .
+January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
 
+January 5, 2006: cube50, like cube48 but with snow advection
 
-##########################################################################
-# getting the code from anonymous CVS server
+December 30, 2006: updates for cube49, the first
+"blend" integration.
 
-cvs co MITgcm_contrib/high_res_cube/README.cs510
-cvs co MITgcm_contrib/high_res_cube/code-mods
-cvs co MITgcm_contrib/high_res_cube/input
-cvs co MITgcm_code
+December 11, 2006: preparing for cube47, same as cube43
+but with Arctic monthly river runoff climatology.
 
+December 5, 2006: 216-CPU code for cube46
+Changed diagnostics to accomodate JMCs latest and some
+changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
+to speed up code.
 
-##########################################################################
-# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort
+November 7, 2006: 216-CPU code for cube43
+Bug fixes in growth.F routine and new set of diagnostics
 
-cd MITgcm
-mkdir build run
-cd build
-\rm *
-\cp ../../MITgcm_contrib/high_res_cube/code-mods/* .
-\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h .
-\rm README SIZE.h_mpi
-../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas
-make depend
-make -j 16
-cd ../run
-\rm *
-\cp ../../MITgcm_contrib/high_res_cube/input/*data* .
-\cp ../../MITgcm_contrib/high_res_cube/input/modpickup .
-\cp ../../MITgcm_contrib/high_res_cube/input/job* .
-\mv data.seaice_hr data.seaice
-\mv data.exf_hr data.exf
-\mv data_hr data
-\ln -sf ../../run_template/tile* .
-\ln -sf ../../run_template/G*dig* .
-\ln -sf ../../run_template/*Init.cube78 .
-\cp ../build/mitgcmuv .
-qsub job_cs510_pleiades450
+October 15, 2006: 216-CPU code for cube40
+
+September 28, 2006: 216-CPU code for cube38
+
+September 4, 2006
+Modified 32*32*6*15 experiments to use grid_cs32.* files from
+ verification/tutorial_held_suarez_cs/input instead of
+ tile* files from verification/global_ocean.cs32x15/input
+
+August 8, 2006: 216-CPU code and input used for cube37
+using "June 10, 2006" MITgcm code.
+
+for online T/S profile diagnostics all that is needed is
+  profiles_init_fixed
+  profiles_inloop
+see pkg/ecco/ecco_cost_init_fixed.F
+    pkg/ecco/cost_averagesfields.F