--- MITgcm_contrib/high_res_cube/README.cs510 2010/05/07 23:11:28 1.48 +++ MITgcm_contrib/high_res_cube/README.cs510 2012/12/06 00:26:42 1.52 @@ -1,9 +1,77 @@ Instructions for setting up a cube-sphere integration with sea-ice. +########################################################################## +# Get forcing files, etc. +# Example below is for cube94 on pleiades + +mkdir cube94 +cd cube94 +ln -sf /nobackupp10/hzhang1/cs510/run_template . +ln -sf /nobackupp10/hzhang1/forcing/jra25 . +ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing . + + +########################################################################## +# getting the code from anonymous CVS server + +cvs co MITgcm_contrib/high_res_cube/README.cs510 +cvs co MITgcm_contrib/high_res_cube/code-mods +cvs co MITgcm_contrib/high_res_cube/input +cvs co MITgcm_code + + +########################################################################## +# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort + +cd MITgcm +mkdir build run +cd build +\rm * +\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . +\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h . +\rm README SIZE.h_mpi +../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas +make depend +make -j 16 +cd ../run +\rm * +\cp ../../MITgcm_contrib/high_res_cube/input/*data* . +\cp ../../MITgcm_contrib/high_res_cube/input/modpickup . +\cp ../../MITgcm_contrib/high_res_cube/input/job* . +\mv data.seaice_hr data.seaice +\mv data.exf_hr data.exf +\mv data_hr data +\ln -sf ../../run_template/tile* . +\ln -sf ../../run_template/G*dig* . +\ln -sf ../../run_template/*Init.cube78 . +\cp ../build/mitgcmuv . +qsub job_cs510_pleiades450 + ================= UPDATES +March 19, 2012. Cube94 on pleiades +This integration is driven by JRA25 (as was cube92) +but it includes shelfice (as did cube86), +it is based on MITgcm > checkpoint63k (that is post ICE workshop code), +it uses optimized Arctic sea ice parameters from +http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice +http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf +it uses Southern Ocean ice and ice shelf parameters from JSO24 +/data14/scratch/hzhang/CP/JSO24/input +(bathymetry and initial conditions tbd), +and it uses pkg/bbl and frazil instead of down_slope + +July 27, 2010. Cube88 on pleiades - same as cube84 but with: + 1. JRA25 instead of cube84 blend forcing + 2. useSALT_PLUME = .TRUE., (off in Southern Ocean) + 3. useDOWN_SLOPE = .TRUE., + 4. split north/south data.sec17saice parameters from regional optimizations + 5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup + 6. 3-day 3D diagnostics + 7. SEAICE_no_slip = .TRUE. to keep code stable + June 30, 2009. Cube86 -same as cube85 but with: 1. updated Southern OCean Bathymetry 2. ice shelf cavities @@ -43,49 +111,43 @@ (cube67, cube68, and cube69 were carried out with cube65 code) April 7 , 2007. Cube64: era40_fullres forcing +February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding -########################################################################## -# Get forcing files, etc. -# Example below is for cube86 on /nobackup/dmenemen +February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) + removed UVEL and VVEL from diagnostics -cd /nobackup/dmenemen/cs510 -mkdir cube86 -cd cube86 -ln -sf ../run_template . -ln -sf ../../forcing/cube78_forcing . +January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 +January 5, 2006: cube50, like cube48 but with snow advection -########################################################################## -# getting the code from anonymous CVS server +December 30, 2006: updates for cube49, the first +"blend" integration. -cvs co MITgcm_contrib/high_res_cube/README.cs510 -cvs co MITgcm_contrib/high_res_cube/code-mods -cvs co MITgcm_contrib/high_res_cube/input -cvs co MITgcm_code +December 11, 2006: preparing for cube47, same as cube43 +but with Arctic monthly river runoff climatology. +December 5, 2006: 216-CPU code for cube46 +Changed diagnostics to accomodate JMCs latest and some +changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h +to speed up code. -########################################################################## -# 510*510*6*50, 216-cpu cube sphere on pleiades with ifort +November 7, 2006: 216-CPU code for cube43 +Bug fixes in growth.F routine and new set of diagnostics -cd MITgcm -mkdir build run -cd build -\rm * -\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . -\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/SIZE.h_216 SIZE.h -../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas -make depend -make -j 8 -cd ../run -\rm * -\cp ../../MITgcm_contrib/high_res_cube/input/* . -\ln -sf ../../run_template/* . -\rm *192_94* *.m heff_* pickup* A* D* E* -\rm G*all.bin G*dig.bin L* PHC* W* -\rm saltInit.cube78 thetaInit.cube78 -\mv data.seaice_hr data.seaice -\mv data.exf_hr data.exf -\mv data_hr data -\cp ../build/mitgcmuv . -\mv job_altix cube86 -qsub cube86 +October 15, 2006: 216-CPU code for cube40 + +September 28, 2006: 216-CPU code for cube38 + +September 4, 2006 +Modified 32*32*6*15 experiments to use grid_cs32.* files from + verification/tutorial_held_suarez_cs/input instead of + tile* files from verification/global_ocean.cs32x15/input + +August 8, 2006: 216-CPU code and input used for cube37 +using "June 10, 2006" MITgcm code. + +for online T/S profile diagnostics all that is needed is + profiles_init_fixed + profiles_inloop +see pkg/ecco/ecco_cost_init_fixed.F + pkg/ecco/cost_averagesfields.F