--- MITgcm_contrib/high_res_cube/README.cs510 2007/04/11 01:22:02 1.5 +++ MITgcm_contrib/high_res_cube/README.cs510 2012/12/06 00:26:42 1.52 @@ -1,42 +1,19 @@ Instructions for setting up a cube-sphere integration with sea-ice. -Forcing fields and other input files needed for the CS510 -configuration can be obtained from -http://ecco2.org/products/model_setups/cs510.html - -================= - -UPDATES - -April 10, 2007: preparing for cube65, Bryan and Lewis 1979 diffusivity -April 7 , 2007: preparing for cube64, era40_fullres forcing - - ########################################################################## # Get forcing files, etc. -# Example below is for cube46 on /nobackup2a/menemenl +# Example below is for cube94 on pleiades -cd /nobackup2a/menemenl -mkdir cube65 -cd cube65 -ln -sf ../run_template . -ln -sf ../ncep_rgau . -ln -sf ../era40_fullres . +mkdir cube94 +cd cube94 +ln -sf /nobackupp10/hzhang1/cs510/run_template . +ln -sf /nobackupp10/hzhang1/forcing/jra25 . +ln -sf /nobackupp10/hzhang1/forcing/cube78_forcing . ########################################################################## # getting the code from anonymous CVS server - bash or sh shell: - $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack' - $ cvs login - ( enter the CVS password: "cvsanon" ) - - tcsh or csh shell: - $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' - $ cvs login - ( enter the CVS password: "cvsanon" ) - cvs co MITgcm_contrib/high_res_cube/README.cs510 cvs co MITgcm_contrib/high_res_cube/code-mods cvs co MITgcm_contrib/high_res_cube/input @@ -44,25 +21,133 @@ ########################################################################## -# 510*510*6*50, 216-cpu cube sphere on altix with ifort +# 510*510*6*50, 450-cpu cube sphere on pleiades with ifort cd MITgcm mkdir build run cd build \rm * \cp ../../MITgcm_contrib/high_res_cube/code-mods/* . -\cp ../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* . -\cp SIZE.h_216 SIZE.h -\cp packages.conf_hr packages.conf -../tools/genmake2 -of ../../MITgcm_contrib/high_res_cube/code-mods/linux_ia64_ifort+mpi_altix_nas +\cp ../../MITgcm_contrib/high_res_cube/code-mods/s450t_34x102/SIZE.h . +\rm README SIZE.h_mpi +../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas make depend -make -j +make -j 16 cd ../run \rm * -\cp ../../MITgcm_contrib/high_res_cube/input/* . -ln -sf ../../run_template/* . -\rm pickup* data.pkg data.seaice data.exf_clim data.exf data *192_94* *.m LEV*JAN* -ln -sf ../../run_template/pickup.0000000216.cube49 pickup.0000000216 -ln -sf ../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216 +\cp ../../MITgcm_contrib/high_res_cube/input/*data* . +\cp ../../MITgcm_contrib/high_res_cube/input/modpickup . +\cp ../../MITgcm_contrib/high_res_cube/input/job* . +\mv data.seaice_hr data.seaice +\mv data.exf_hr data.exf +\mv data_hr data +\ln -sf ../../run_template/tile* . +\ln -sf ../../run_template/G*dig* . +\ln -sf ../../run_template/*Init.cube78 . \cp ../build/mitgcmuv . -qsub job_altix +qsub job_cs510_pleiades450 + +================= + +UPDATES + +March 19, 2012. Cube94 on pleiades +This integration is driven by JRA25 (as was cube92) +but it includes shelfice (as did cube86), +it is based on MITgcm > checkpoint63k (that is post ICE workshop code), +it uses optimized Arctic sea ice parameters from +http://ecco2.jpl.nasa.gov/data1/arctic/output/newcode_050109/JRA25_OPT3/input/data.seaice +http://ecco2.org/manuscripts/2011/NguyenJGR2011.pdf +it uses Southern Ocean ice and ice shelf parameters from JSO24 +/data14/scratch/hzhang/CP/JSO24/input +(bathymetry and initial conditions tbd), +and it uses pkg/bbl and frazil instead of down_slope + +July 27, 2010. Cube88 on pleiades - same as cube84 but with: + 1. JRA25 instead of cube84 blend forcing + 2. useSALT_PLUME = .TRUE., (off in Southern Ocean) + 3. useDOWN_SLOPE = .TRUE., + 4. split north/south data.sec17saice parameters from regional optimizations + 5. initialize from T/S/U/V/ETAN and sea ice from cube78 Jan 1992 pickup + 6. 3-day 3D diagnostics + 7. SEAICE_no_slip = .TRUE. to keep code stable + +June 30, 2009. Cube86 -same as cube85 but with: + 1. updated Southern OCean Bathymetry + 2. ice shelf cavities + +June 16, 2009. Cube85 -same as cube84 but with: + 1. split north/south data.seaice parameters from regional optimizations + 2. includes pkg/salt_plume in the Arctic and pkg/down_slope globally + 3. initialize from T/S/U/V/ETAN and sea ice files + 4. 3-day 3D diagnostics + 5. SEAICE_no_slip=.TRUE. to keep code stable + +June 13, 2008. Cube 81 - same as cube79 but with + 1. new values for data.seaice and data.exf + 2. DIFFKR_2_20_1_lat6070_cube81, which has diffKrS/T=3.55e-7 in Arctic + 3. GMRedi turned off + +December 22, 2007. Cube80 - same as cube79 but with + SEAICE_BREAKS_VERIFICATION (SST relaxation depends on SIarea) + ALLOW_CLIMSST_RELAXATION to Reynold's daily 1/4-deg AVHRR analysis + ALLOW_CLIMSST_RELAXATION to monthly 1-deg WOA05 analysis +December 2, 2007. Cube79 - same as cube78 (blend3) but with + useRelativeWind=.TRUE. and SEAICE_gamma_t=259200 +November 22, 2007. Cube 78 - blend 3 +November 6, 2007. Cube 77 - same as cube75 but with SEAICE_SALINITY + and era40_ecmwf_blend/cube59_GPCP forcing +November 3, 2007. Cube 76 - same as cube77 but 1979-2006 integration +August 31, 2007. Cube75 - the second blend. +August 9, 2007. Cube74 +August 6, 2007. Cube73 +July 24, 2007. Cube72 +July 8, 2007. Cube66: SEAICE_MULTICATEGORY, SEAICE_VARIABLE_FREEZING_POINT, + rhonil=1027.5, [temp/salt]AdvScheme=7, convertFW2Salt=-1, LSR_ERROR=1e-6 + useRealFreshWaterFlux=.TRUE., runoff_lat_inc=179*1, SEAICE_salinity=10 + bathyFile=GEBCO_510x6x510_ver06_dig.bin, HeffFile=heff_file8 + SEAICE_availHeatFrac=.5, useGMRedi=.TRUE. +April 24, 2007. Cube65: Bryan and Lewis 1979 diffusivity + (cube67, cube68, and cube69 were carried out with cube65 code) +April 7 , 2007. Cube64: era40_fullres forcing + +February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding + +February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002) + removed UVEL and VVEL from diagnostics + +January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012 + +January 5, 2006: cube50, like cube48 but with snow advection + +December 30, 2006: updates for cube49, the first +"blend" integration. + +December 11, 2006: preparing for cube47, same as cube43 +but with Arctic monthly river runoff climatology. + +December 5, 2006: 216-CPU code for cube46 +Changed diagnostics to accomodate JMCs latest and some +changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h +to speed up code. + +November 7, 2006: 216-CPU code for cube43 +Bug fixes in growth.F routine and new set of diagnostics + +October 15, 2006: 216-CPU code for cube40 + +September 28, 2006: 216-CPU code for cube38 + +September 4, 2006 +Modified 32*32*6*15 experiments to use grid_cs32.* files from + verification/tutorial_held_suarez_cs/input instead of + tile* files from verification/global_ocean.cs32x15/input + +August 8, 2006: 216-CPU code and input used for cube37 +using "June 10, 2006" MITgcm code. + +for online T/S profile diagnostics all that is needed is + profiles_init_fixed + profiles_inloop +see pkg/ecco/ecco_cost_init_fixed.F + pkg/ecco/cost_averagesfields.F