mkdir cube92
cd cube92

cvs co -r checkpoint62h MITgcm
 
cd MITgcm
mkdir build run


#BUILDing
cd build
#scp from skylla:/data1/cube/cube92/code or http://ecco2.jpl.nasa.gov/data1/cube/cube92/code
#now @/nobackup/hzhang1/tmp4gael/code
#cp -p /nobackup/hzhang1/tmp4gael/code/* .
../tools/genmake2 -of linux_amd64_ifort+mpi_ice_nas
make depend
make -j 8



#RUNning
cd ../run
\rm *
#data
#scp from skylla:/data1/cube/cube92/input or http://ecco2.jpl.nasa.gov/data1/cube/cube92/
#now @/nobackup/hzhang1/tmp4gael/run
#cp -p /nobackup/hzhang1/tmp4gael/run/data* .
#cp -p /nobackup/hzhang1/tmp4gael/run/eedata* .
#cp -p /nobackup/hzhang1/tmp4gael/run/modpic* .
#cp -p /nobackup/hzhang1/tmp4gael/run/run* .

ln -sf /nobackup/hzhang1/cs510/run_template/*cube78 .
ln -sf /nobackup/hzhang1/cs510/run_template/tile* .
ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .
mv pickup.0000000216.cube78 pickup.0000000216
mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta       
mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
mv pickup.0000000216.meta.cube78 pickup.0000000216.meta
#forcing
ln -sf /nobackup/hzhang1/forcing/cube78_forcing .
ln -sf /nobackup/hzhang1/forcing/jra25 .
#exe
ln -sf ../build/mitgcmuv .
#running
qsub run_cube92