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revision 1.1 by dimitri, Sun Nov 23 17:16:24 2003 UTC revision 1.33 by dimitri, Tue Mar 16 17:20:07 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last tested: March 9, 2004.
3    Code and input used for integrating cube5.
4    
5    
6    ##########################################################################
7    ##########################################################################
8    # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
12  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13  cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15  cvs co -r checkpoint52a_post MITgcm_code  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube5 MITgcm_code
17    cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
18    
19    
20    ##########################################################################
21    ##########################################################################
22    # 32*32*6*15, 1-cpu cube sphere
23    
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27  \rm mdsio_readfield.F  
28  cd ../build  cd ../build
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
31    \rm getcon.F
32    make
33    
34    cd ..
35    mkdir run
36    cd run
37    \cp ../input/* .
38    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
39    ../build/mitgcmuv >& output.txt
40    
41    comparison output is in:
42    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
43    
44    to use matlab to look at the output
45    matlab
46    
47    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
48        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
49        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
50    end
51    
52    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
53    mask=0*heff; mask(find(heff>.001))=1;
54    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
56    clf
57    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
58    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
59    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
60    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
61    
62    
63    ##########################################################################
64    ##########################################################################
65    # 32*32*6*15, 2-cpu cube sphere on the altices with efc
66    
67    cd MITgcm/verification/global_ocean.cs32x15/code
68    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
69    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
70    \cp SIZE.h_mpi SIZE.h
71    
72    cd ../build
73    \rm *
74    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
75    make depend
76    \rm getcon.F
77  make  make
78    
79  cd ..  cd ..
80  mkdir run  mkdir run
81  cd run  cd run
82  cp ../input/* .  \rm *
83  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../input/* .
84  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
85  ../build/mitgcmuv >& output  mpirun -np 2 ../build/mitgcmuv
86    
87    
88    ##########################################################################
89    ##########################################################################
90    # 510*510*6*50, 54-cpu cube sphere on the altices with efc
91    # requires input files in sudirectories run_template and ncep_rgau
92    # presently residing under orion:/tmp1/dmenem/cube
93    
94    cd MITgcm/verification/global_ocean.cs32x15/code
95    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
97    \cp SIZE.h_54 SIZE.h
98    \cp packages.conf_hr packages.conf
99    
100    cd ../build
101    \rm *
102    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
103    make depend
104    \rm getcon.F
105    make
106    
107    cd ..
108    mkdir run
109    cd run
110    \rm *
111    \cp ../input/* .
112    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
113    qsub job_orion
114    
115    
116    ##########################################################################
117    ##########################################################################
118    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
119    # requires input files in sudirectories run_template and ncep_rgau
120    # presently residing under orion:/tmp1/dmenem/cube
121    
122    cd MITgcm/verification/global_ocean.cs32x15/code
123    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
125    \cp SIZE.h_41 SIZE.h
126    \cp packages.conf_hr packages.conf
127    
128    cd ../build
129    \rm *
130    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
131    make depend
132    \rm getcon.F
133    make
134    
135    cd ..
136    mkdir run
137    cd run
138    \rm *
139    \cp ../input/* .
140    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
141    qsub job_orion41
142    
143    
144    ##########################################################################
145    ##########################################################################
146    # 510*510*6*50, 216-cpu cube sphere on altix with efc
147    # requires input files in sudirectories run_template and ncep_rgau
148    # these can be obained from lou:/u/menemenl/cube
149    
150    cd MITgcm/verification/global_ocean.cs32x15/code
151    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
152    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
153    \cp SIZE.h_216 SIZE.h
154    \cp packages.conf_hr packages.conf
155    
156    cd ../build
157    \rm *
158    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
159    make depend
160    \rm getcon.F
161    make
162    
163    cd ..
164    mkdir run
165    cd run
166    \rm *
167    \cp ../input/* .
168    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
169    qsub job_altix
170    
171    
172    ##########################################################################
173    ##########################################################################
174    # matlab script for generating pChkptFreq
175    
176    nTimeSteps=26352;
177    for niter0=216:26352:(26352*11)
178     pChkptFreq=(niter0+nTimeSteps)*1200;
179     day=pChkptFreq/24/60/60;
180     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
181     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
182    end
183    
184    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
185    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
186    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
187    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
188    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
189    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
190    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
191    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
192    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
193    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
194    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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