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revision 1.1 by dimitri, Sun Nov 23 17:16:24 2003 UTC revision 1.37 by dimitri, Tue May 11 04:03:55 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last tested: March 28, 2004.
3    Code and input used for integrating cube5.
4    
5    
6    ##########################################################################
7    ##########################################################################
8    # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
11  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
12  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice
13  cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods
14  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input
15  cvs co -r checkpoint52a_post MITgcm_code  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results
16  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube5 MITgcm_code
17  cd MITgcm/verification/global_ocean.cs32x15/code  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15
18  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
19  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  
20  \rm mdsio_readfield.F  ##########################################################################
21    ##########################################################################
22    # 32*32*6*15, 1-cpu cube sphere
23    
24    cd MITgcm/verification/global_ocean.cs32x15/code
25    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
27    cd ../build
28    \rm *
29    ../../../tools/genmake2 -mods=../code
30    make depend
31    make
32    cd ..
33    mkdir run
34    cd run
35    \rm *
36    \cp ../input/* .
37    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38    ../build/mitgcmuv >& output.txt
39    
40    comparison output is in:
41    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43    to use matlab to look at the output
44    matlab
45    
46    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69  cd ../build  cd ../build
70    \rm *
71  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
72  make depend  make depend
73  make  make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77  cp ../input/* .  \rm *
78  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../input/* .
79  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output  ../build/mitgcmuv >& output.txt
81    
82    comparison output is in:
83    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
84    
85    to use matlab to look at the output
86    matlab
87    
88    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
89        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
90        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
91    end
92    
93    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
94    mask=0*heff; mask(find(heff>.001))=1;
95    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
96    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
97    clf
98    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
99    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
100    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
101    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
102    
103    
104    ##########################################################################
105    ##########################################################################
106    # 32*32*6*15, 2-cpu cube sphere on the altices with efc
107    
108    cd MITgcm/verification/global_ocean.cs32x15/code
109    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
110    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
111    \cp SIZE.h_mpi SIZE.h
112    
113    cd ../build
114    \rm *
115    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
116    make depend
117    make
118    
119    cd ..
120    mkdir run
121    cd run
122    \rm *
123    \cp ../input/* .
124    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
125    mpirun -np 2 ../build/mitgcmuv
126    
127    
128    ##########################################################################
129    ##########################################################################
130    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
131    # requires input files in sudirectories run_template and ncep_rgau
132    # presently residing under orion:/tmp1/dmenem/cube
133    
134    cd MITgcm/verification/global_ocean.cs32x15/code
135    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
137    \cp SIZE.h_54 SIZE.h
138    \cp packages.conf_hr packages.conf
139    
140    cd ../build
141    \rm *
142    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
143    make depend
144    make
145    
146    cd ..
147    mkdir run
148    cd run
149    \rm *
150    \cp ../input/* .
151    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
152    qsub job_orion
153    
154    
155    ##########################################################################
156    ##########################################################################
157    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
158    # starting with pickup file from end of 1992
159    # requires input files in sudirectories run_template and ncep_rgau
160    # presently residing under orion:/tmp1/dmenem/cube
161    
162    cd MITgcm/verification/global_ocean.cs32x15/code
163    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
164    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
165    \cp packages.conf_hr packages.conf
166    
167    cd ../build
168    \rm *
169    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
170    make depend
171    make
172    
173    cd ..
174    mkdir run
175    cd run
176    \rm *
177    \cp ../input/* .
178    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
179    qsub job_altix93_newIO
180    
181    
182    ##########################################################################
183    ##########################################################################
184    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
185    # requires input files in sudirectories run_template and ncep_rgau
186    # presently residing under orion:/tmp1/dmenem/cube
187    
188    cd MITgcm/verification/global_ocean.cs32x15/code
189    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
190    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
191    \cp SIZE.h_41 SIZE.h
192    \cp packages.conf_hr packages.conf
193    
194    cd ../build
195    \rm *
196    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
197    make depend
198    make
199    
200    cd ..
201    mkdir run
202    cd run
203    \rm *
204    \cp ../input/* .
205    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
206    qsub job_orion41
207    
208    
209    ##########################################################################
210    ##########################################################################
211    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
212    # requires input files in sudirectories run_template and ncep_rgau
213    # presently residing under orion:/tmp1/dmenem/cube
214    
215    cd MITgcm/verification/global_ocean.cs32x15/code
216    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
217    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
218    \cp SIZE.h_50 SIZE.h
219    \cp packages.conf_hr packages.conf
220    
221    cd ../build
222    \rm *
223    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
224    make depend
225    make
226    
227    cd ..
228    mkdir run
229    cd run
230    \rm *
231    \cp ../input/* .
232    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233    qsub job_orion
234    
235    
236    ##########################################################################
237    ##########################################################################
238    # 510*510*6*50, 216-cpu cube sphere on altix with efc
239    # requires input files in sudirectories run_template and ncep_rgau
240    # these can be obained from lou:/u/menemenl/cube
241    
242    cd MITgcm/verification/global_ocean.cs32x15/code
243    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
244    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
245    \cp SIZE.h_216 SIZE.h
246    \cp packages.conf_hr packages.conf
247    
248    cd ../build
249    \rm *
250    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
251    make depend
252    make
253    
254    cd ..
255    mkdir run
256    cd run
257    \rm *
258    \cp ../input/* .
259    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
260    qsub job_altix
261    
262    
263    ##########################################################################
264    ##########################################################################
265    # matlab script for generating pChkptFreq
266    
267    nTimeSteps=26352;
268    for niter0=216:26352:(26352*12)
269     pChkptFreq=(niter0+nTimeSteps)*1200;
270     day=pChkptFreq/24/60/60;
271     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
272     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
273    end
274    
275    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
276    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
277    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
278    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
279    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
280    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
281    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
282    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
283    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
284    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
285    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
286    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
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