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revision 1.10 by dimitri, Sun Dec 14 02:59:06 2003 UTC revision 1.31 by dimitri, Wed Mar 3 06:56:37 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  Date last tested: March 2, 2004.
3    This is the code used for cube4, the third 1992-2002 510x510x6
4    cube-sphere integration.
5    
6    
7  ##########################################################################  ##########################################################################
8  ##########################################################################  ##########################################################################
9  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube4a MITgcm_contrib/high_res_cube/README_ice
14  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube4a MITgcm_contrib/high_res_cube/code-mods
15  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube4a MITgcm_contrib/high_res_cube/matlab-grid-converter
16  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  cvs co -r hrcube4a MITgcm_contrib/high_res_cube/input
17  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cvs co -r hrcube4a MITgcm_contrib/high_res_cube/results
18  cvs co -r checkpoint52d_pre MITgcm_code  cvs co -r hrcube4a MITgcm_code
19  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube4a MITgcm/verification/global_ocean.cs32x15
20    
21    
22    ##########################################################################
23    ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
 \rm mdsio_readfield.F  
29    
30  cd ..  cd ../build
 mkdir build  
 cd build  
31  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
32  make depend  make depend
33    \rm getcon.F
34  make  make
35    
36  cd ..  cd ..
# Line 41  comparison output is in: Line 46  comparison output is in:
46    
47  to use matlab to look at the output  to use matlab to look at the output
48  matlab  matlab
49    
50  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
51      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
52      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
53  end  end
54    
55    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
56    mask=0*heff; mask(find(heff>.001))=1;
57    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
58    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
59    clf
60    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
61    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
62    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
63    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
64    
65    
66  ##########################################################################  ##########################################################################
67  ##########################################################################  ##########################################################################
68  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with efc
69    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
   
70  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
71  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
72  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
73  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
 \rm mdsio_readfield.F  
74    
75  cd ..  cd ../build
76  mkdir build  \rm *
 cd build  
77  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
78  make depend  make depend
79    \rm getcon.F
80  make  make
81    
82  cd ..  cd ..
83  mkdir run  mkdir run
84  cd run  cd run
85    \rm *
86  \cp ../input/* .  \cp ../input/* .
87  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
88  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 87  mpirun -np 2 ../build/mitgcmuv Line 92  mpirun -np 2 ../build/mitgcmuv
92  ##########################################################################  ##########################################################################
93  ##########################################################################  ##########################################################################
94  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-cpu cube sphere on the altices with efc
95    # requires input files in sudirectories run_template and ncep_rgau
96  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # presently residing under orion:/tmp1/dmenem/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
97    
98  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
99  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
100  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
101  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
102  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
 \rm mdsio_readfield.F  
103    
104  cd ..  cd ../build
105  mkdir build  \rm *
 cd build  
106  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
107  make depend  make depend
108    \rm getcon.F
109  make  make
110    
111  cd ..  cd ..
112  mkdir run  mkdir run
113  cd run  cd run
114    \rm *
115  \cp ../input/* .  \cp ../input/* .
116  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
117  qsub job_orion  qsub job_orion
118    
119    
120  ##########################################################################  ##########################################################################
121  ##########################################################################  ##########################################################################
122  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
123    # requires input files in sudirectories run_template and ncep_rgau
124    # presently residing under orion:/tmp1/dmenem/cube
125    
126  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd MITgcm/verification/global_ocean.cs32x15/code
127  cvs login ( CVS password: cvsanon )  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
128  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
129  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  \cp SIZE.h_41 SIZE.h
130  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  \cp packages.conf_hr packages.conf
131  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
132  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cd ../build
133  cvs co -r checkpoint52d_pre MITgcm_code  \rm *
134  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
135    make depend
136    \rm getcon.F
137    make
138    
139    cd ..
140    mkdir run
141    cd run
142    \rm *
143    \cp ../input/* .
144    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145    qsub job_orion41
146    
147    
148    ##########################################################################
149    ##########################################################################
150    # 510*510*6*50, 216-cpu cube sphere on altix with efc
151    # requires input files in sudirectories run_template and ncep_rgau
152    # these can be obained from lou:/u/menemenl/cube
153    
154  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
155  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
156  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
157  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
158  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
 \rm mdsio_readfield.F  
159    
160  cd ..  cd ../build
161  mkdir build  \rm *
162  cd build  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  
163  make depend  make depend
164    \rm getcon.F
165  make  make
166    
167  cd ..  cd ..
168  mkdir run  mkdir run
169  cd run  cd run
170    \rm *
171  \cp ../input/* .  \cp ../input/* .
172  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173  \cp data_hr data  qsub job_altix
174  \cp data.pkg_hr data.pkg  
175  \ln -sf ../../../../run_template/tile00* .  
176  \ln -sf ../../../../run_template/LEV* .  ##########################################################################
177  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  ##########################################################################
178  qsub job_orion  # matlab script for generating pChkptFreq
179    
180    nTimeSteps=26352;
181    for niter0=216:26352:(26352*11)
182     pChkptFreq=(niter0+nTimeSteps)*1200;
183     day=pChkptFreq/24/60/60;
184     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
185     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
186    end
187    
188    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
189    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
190    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
191    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
192    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
193    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
194    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
195    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
196    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
197    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
198    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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