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revision 1.13 by dimitri, Sat Jan 10 00:50:25 2004 UTC revision 1.77 by dimitri, Wed Nov 22 07:21:31 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  
3    =================
4    UPDATES
5    
6    November 22, 2006: 216-CPU code for cube44
7    Changed diagnostics, yet again.
8    
9    November 7, 2006: 216-CPU code for cube43
10    Bug fixes in growth.F routine and new set of diagnostics
11    
12    October 15, 2006: 216-CPU code for cube40
13    
14    September 28, 2006: 216-CPU code for cube38
15    
16    September 4, 2006
17    Modified 32*32*6*15 experiments to use grid_cs32.* files from
18     verification/tutorial_held_suarez_cs/input instead of
19     tile* files from verification/global_ocean.cs32x15/input
20    
21    August 8, 2006: 216-CPU code and input used for cube37
22    using "June 10, 2006" MITgcm code.
23    
24    for online T/S profile diagnostics all that is needed is
25      profiles_init_fixed
26      profiles_inloop
27    see pkg/ecco/ecco_cost_init_fixed.F
28        pkg/ecco/cost_averagesfields.F
29    
30    
31  ##########################################################################  ##########################################################################
32  ##########################################################################  ##########################################################################
33  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
34    #
35    
36      bash or sh shell:
37        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
38        $ cvs login
39          ( enter the CVS password: "cvsanon" )
40    
41      tcsh or csh shell:
42        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
43        $ cvs login
44          ( enter the CVS password: "cvsanon" )
45    
46    cvs co MITgcm_contrib/high_res_cube/README_ice
47    cvs co MITgcm_contrib/high_res_cube/code-mods
48    cvs co MITgcm_contrib/high_res_cube/input
49    cvs co MITgcm_contrib/high_res_cube/results
50    cvs co MITgcm_code
51    cvs co MITgcm/verification/global_ocean.cs32x15
52    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
53    
54    
55  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  ##########################################################################
56  cvs login ( CVS password: cvsanon )  ##########################################################################
57  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
58  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  # requires input files in sudirectories run_template and ncep_rgau
59  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  # these can be obained from lou:/u/menemenl/cube
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
60    
61  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
62  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
64  \rm mdsio_readfield.F  \cp SIZE.h_216 SIZE.h
65    \cp packages.conf_hr packages.conf
66    
67    cd ../build
68    \rm *
69    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
70    make depend
71    make -j
72    
73  cd ..  cd ..
74  mkdir build  mkdir run
75  cd build  cd run
76    \rm *
77    \cp ../input/* .
78    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79    ln -sf ../../../../run_template/* .
80    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
81    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
82    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
83    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
84    \cp ../build/mitgcmuv .
85    qsub job_altix
86    
87    
88    ##########################################################################
89    ##########################################################################
90    # 32*32*6*15, 1-cpu cube sphere
91    
92    cd MITgcm/verification/global_ocean.cs32x15/code
93    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
94    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
95    cd ../build
96    \rm *
97  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
98  make depend  make depend
99  make  make
   
100  cd ..  cd ..
101  mkdir run  mkdir run
102  cd run  cd run
103    \rm *
104    \cp ../../tutorial_held_suarez_cs/input/grid* .
105  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
106  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
107  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
108    
# Line 41  comparison output is in: Line 111  comparison output is in:
111    
112  to use matlab to look at the output  to use matlab to look at the output
113  matlab  matlab
114  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
115      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
116             'surForcT','oceTAUX','oceTAUY','surForcS'}
117        tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
118      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
119  end  end
120    
121    heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
122    mask=0*heff; mask(find(heff>.001))=1;
123    uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
124    vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
125    clf
126    subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
127    subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
128    subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
129    subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
130    
131    
132  ##########################################################################  ##########################################################################
133  ##########################################################################  ##########################################################################
134  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
135    
136  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd MITgcm/verification/global_ocean.cs32x15/code
137  cvs login ( CVS password: cvsanon )  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
138  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  \cp ../code_alt/code.176t_8x4/* .
139  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  cd ../build
140  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  \rm *
141  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  ../../../tools/genmake2 -mods=../code
142  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  make depend
143  cvs co -r checkpoint52d_pre MITgcm_code  make
144  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cd ..
145    mkdir run
146    cd run
147    \rm *
148    \cp ../../tutorial_held_suarez_cs/input/grid* .
149    \cp ../input/* .
150    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151    ../build/mitgcmuv >& output.txt
152    
153    
154    ##########################################################################
155    ##########################################################################
156    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
157    
158  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
159  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
161  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
 \rm mdsio_readfield.F  
162    
163  cd ..  cd ../build
164  mkdir build  \rm *
165  cd build  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  
166  make depend  make depend
167  make  make -j
168    
169  cd ..  cd ..
170  mkdir run  mkdir run
171  cd run  cd run
172    \rm *
173    \cp ../../tutorial_held_suarez_cs/input/grid* .
174  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
175  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
176  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
177    
178    
179  ##########################################################################  ##########################################################################
180  ##########################################################################  ##########################################################################
181  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
182    # starting with pickup file from end of 1992
183    # requires input files in sudirectories run_template and ncep_rgau
184    
185    cd MITgcm/verification/global_ocean.cs32x15/code
186    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
187    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
188    \cp packages.conf_hr packages.conf
189    
190  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd ../build
191  cvs login ( CVS password: cvsanon )  \rm *
192  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
193  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  make depend
194  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  make -j
195  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
196  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cd ..
197  cvs co -r checkpoint52d_pre MITgcm_code  mkdir run
198  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cd run
199    \rm *
200    \cp ../input/* .
201    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
202    qsub job_altix92_54t
203    
204    
205    ##########################################################################
206    ##########################################################################
207    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
208    # uses s1500t_17x51 configuration
209    
210  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
211  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
212  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
213  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_150 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
214  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
215  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
216  \rm mdsio_readfield.F  cd ../build
217    \rm *
218    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
219    make depend
220    make -j
221    
222  cd ..  cd ..
223  mkdir build  mkdir run
224  cd build  cd run
225  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
226    \cp ../input/* .
227    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
228    ln -sf ../../../../run_template/* .
229    \rm pickup*
230    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
231    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
232    \cp ../build/mitgcmuv mitgcmuv150
233    qsub job_altix150
234    
235    
236    ##########################################################################
237    ##########################################################################
238    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
239    # uses s1500t_17x51 configuration
240    # example for running on c17-c20 using arrayd
241    
242    cd MITgcm/verification/global_ocean.cs32x15/code
243    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
244    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
245    \cp SIZE.h_375 SIZE.h
246    \cp packages.conf_hr packages.conf
247    
248    cd ../build
249    \rm *
250    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
251  make depend  make depend
252  make  make -j
253    
254  cd ..  cd ..
255  mkdir run  mkdir run
256  cd run  cd run
257    \rm *
258  \cp ../input/* .  \cp ../input/* .
259  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
260  \cp data_hr data  ln -sf ../../../../run_template/* .
261  \cp data.pkg_hr data.pkg  \rm pickup*
262  \ln -sf ../../../../run_template/tile00* .  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
263  \ln -sf ../../../../run_template/LEV* .  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
264  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  \cp ../build/mitgcmuv .
265  qsub job_orion  job_c20_375cpu < /dev/null >&! output.run &
266    
267    
268    ##########################################################################
269    ##########################################################################
270    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
271    # uses s1500t_17x51 configuration
272    # example for running on c17-c20 using arrayd
273    
274    cd MITgcm/verification/global_ocean.cs32x15/code
275    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
276    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
277    \cp SIZE.h_375 SIZE.h
278    \cp packages.conf_hr packages.conf
279    
280    cd ../build
281    \rm *
282    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
283    make depend
284    make -j
285    
286    cd ..
287    mkdir run
288    cd run
289    \rm *
290    \cp ../input/* .
291    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
292    ln -sf ../../../../run_template/* .
293    \rm pickup*
294    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
295    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
296    \cp ../build/mitgcmuv .
297    job_c20_375cpu < /dev/null >&! output.run &
298    
299    
300  ##########################################################################  ##########################################################################
301  ##########################################################################  ##########################################################################
302  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 500-cpu, excludes land
303    # uses s1500t_17x51 configuration
304    # example for running on c17-c20 using arrayd
305    
306    cd MITgcm/verification/global_ocean.cs32x15/code
307    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
308    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
309    \cp SIZE.h_500 SIZE.h
310    \cp packages.conf_hr packages.conf
311    
312    cd ../build
313    \rm *
314    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
315    make depend
316    make -j
317    
318    cd ..
319    mkdir run
320    cd run
321    \rm *
322    \cp ../input/* .
323    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
324    ln -sf ../../../../run_template/* .
325    \rm pickup*
326    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
327    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
328    \cp ../build/mitgcmuv .
329    job_c19_500cpu < /dev/null >&! output.run &
330    
331  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
332  cvs login ( CVS password: cvsanon )  ##########################################################################
333  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  ##########################################################################
334  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  # 510*510*6*50, 216-cpu cube sphere on cosmos
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
335    
336  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
337  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
338  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
339  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
340  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
341  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
342  \rm mdsio_readfield.F  module unload latest_intel80
343    module unload mpich-gm-intel80
344    module load latest_intel81
345    module load mpich-gm-intel81
346    
347    cd ../build
348    \rm *
349    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
350    make depend
351    make -j
352    
353  cd ..  cd ..
354  mkdir build  mkdir run
355  cd build  cd run
356    \rm *
357    \cp ../input/* .
358    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
359    ln -sf ../../../../run_template/* .
360    \rm pickup*
361    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
362    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
363    \cp ../build/mitgcmuv .
364    bsub < job_cosmos
365    
366    
367    ##########################################################################
368    ##########################################################################
369    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
370    # requires input files in sudirectories run_template and ncep_rgau
371    # presently residing under orion:/tmp1/dmenem/cube
372    
373    cd MITgcm/verification/global_ocean.cs32x15/code
374    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
375    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
376    \cp SIZE.h_54 SIZE.h
377    \cp packages.conf_hr packages.conf
378    
379    cd ../build
380    \rm *
381  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
382  make depend  make depend
383  make  make -j
384    
385  cd ..  cd ..
386  mkdir run  mkdir run
387  cd run  cd run
388  qsub job_altix  \rm *
389    \cp ../input/* .
390    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
391    qsub job_orion
392    
393    
394    ##########################################################################
395    ##########################################################################
396    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
397    # requires input files in sudirectories run_template and ncep_rgau
398    # presently residing under orion:/tmp1/dmenem/cube
399    
400    cd MITgcm/verification/global_ocean.cs32x15/code
401    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
402    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
403    \cp SIZE.h_41 SIZE.h
404    \cp packages.conf_hr packages.conf
405    
406    cd ../build
407    \rm *
408    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
409    make depend
410    make -j
411    
412    cd ..
413    mkdir run
414    cd run
415    \rm *
416    \cp ../input/* .
417    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
418    qsub job_orion41
419    
420    
421    ##########################################################################
422    ##########################################################################
423    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
424    # requires input files in sudirectories run_template and ncep_rgau
425    # presently residing under orion:/tmp1/dmenem/cube
426    
427    cd MITgcm/verification/global_ocean.cs32x15/code
428    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
429    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
430    \cp SIZE.h_50 SIZE.h
431    \cp packages.conf_hr packages.conf
432    
433    cd ../build
434    \rm *
435    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
436    make depend
437    make -j
438    
439    cd ..
440    mkdir run
441    cd run
442    \rm *
443    \cp ../input/* .
444    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
445    qsub job_orion
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