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revision 1.10 by dimitri, Sun Dec 14 02:59:06 2003 UTC revision 1.17 by dimitri, Sun Jan 25 00:27:25 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  Date last tested: January 9, 2004.
3    This is the code used for first multi-year 510x510x6
4    cube-sphere integration.
5    
6    
7  ##########################################################################  ##########################################################################
8  ##########################################################################  ##########################################################################
9  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice
14  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods
15  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter
16  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input
17  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results
18  cvs co -r checkpoint52d_pre MITgcm_code  cvs co -r hrcube_1 MITgcm_code
19  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15
20    
21    
22    ##########################################################################
23    ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 41  comparison output is in: Line 48  comparison output is in:
48    
49  to use matlab to look at the output  to use matlab to look at the output
50  matlab  matlab
51    
52  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
53      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
54      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
55  end  end
56    
57    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
58    mask=0*heff; mask(find(heff>.001))=1;
59    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
60    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
61    clf
62    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
63    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
64    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
65    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
66    
67    
68  ##########################################################################  ##########################################################################
69  ##########################################################################  ##########################################################################
70  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with efc
71    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
   
72  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
73  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
74  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
# Line 71  cd MITgcm/verification/global_ocean.cs32 Line 79  cd MITgcm/verification/global_ocean.cs32
79  cd ..  cd ..
80  mkdir build  mkdir build
81  cd build  cd build
82    \rm *
83  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
84  make depend  make depend
85  make  make
# Line 78  make Line 87  make
87  cd ..  cd ..
88  mkdir run  mkdir run
89  cd run  cd run
90    \rm *
91  \cp ../input/* .  \cp ../input/* .
92  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
93  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 87  mpirun -np 2 ../build/mitgcmuv Line 97  mpirun -np 2 ../build/mitgcmuv
97  ##########################################################################  ##########################################################################
98  ##########################################################################  ##########################################################################
99  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-cpu cube sphere on the altices with efc
100    # requires input files in sudirectories run_template and ncep_rgau
101  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # presently residing under orion:/tmp1/dmenem/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
102    
103  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
104  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
105  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
106  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
107  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
108    \cp packages.conf_hr packages.conf
109    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
110  \rm mdsio_readfield.F  \rm mdsio_readfield.F
111    
112  cd ..  cd ..
113  mkdir build  mkdir build
114  cd build  cd build
115    \rm *
116  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
117  make depend  make depend
118  make  make
# Line 115  make Line 120  make
120  cd ..  cd ..
121  mkdir run  mkdir run
122  cd run  cd run
123    \rm *
124  \cp ../input/* .  \cp ../input/* .
125  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
126  qsub job_orion  qsub job_orion
127    
128    
129  ##########################################################################  ##########################################################################
130  ##########################################################################  ##########################################################################
131  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
132    # requires input files in sudirectories run_template and ncep_rgau
133  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # these can be obained from lou:/u/menemenl/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
134    
135  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
136  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
137  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
138  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
139  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
140    \cp packages.conf_hr packages.conf
141    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
142  \rm mdsio_readfield.F  \rm mdsio_readfield.F
143    
144  cd ..  cd ..
145  mkdir build  mkdir build
146  cd build  cd build
147  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
148    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
149  make depend  make depend
150  make  make
151    
152  cd ..  cd ..
153  mkdir run  mkdir run
154  cd run  cd run
155    \rm *
156  \cp ../input/* .  \cp ../input/* .
157  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
158  \cp data_hr data  qsub job_altix
159  \cp data.pkg_hr data.pkg  
160  \ln -sf ../../../../run_template/tile00* .  
161  \ln -sf ../../../../run_template/LEV* .  ##########################################################################
162  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  ##########################################################################
163  qsub job_orion  # matlab script for generating pChkptFreq
164    
165    nTimeSteps=26352;
166    for niter0=216:26352:(26352*11)
167     pChkptFreq=(niter0+nTimeSteps)*1200;
168     day=pChkptFreq/24/60/60;
169     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
170     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
171    end
172    
173    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
174    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
175    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
176    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
177    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
178    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
179    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
180    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
181    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
182    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
183    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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