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revision 1.4 by dimitri, Mon Nov 24 06:32:44 2003 UTC revision 1.17 by dimitri, Sun Jan 25 00:27:25 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last tested: January 9, 2004.
3    This is the code used for first multi-year 510x510x6
4    cube-sphere integration.
5    
6    
7    ##########################################################################
8    ##########################################################################
9    # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13    cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/README_ice
14    cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/code-mods
15    cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/matlab-grid-converter
16    cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/input
17    cvs co -r hrcube_1 MITgcm_contrib/high_res_cube/results
18    cvs co -r hrcube_1 MITgcm_code
19    cvs co -r hrcube_1 MITgcm/verification/global_ocean.cs32x15
20    
 cvs co MITgcm_contrib/high_res_cube/README_ice  
 cvs co MITgcm_contrib/high_res_cube/code-mods  
 cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co MITgcm_contrib/high_res_cube/input  
 cvs co MITgcm_contrib/high_res_cube/results  
21    
22  cvs co -r checkpoint52b_post MITgcm_code  ##########################################################################
23  cvs co -r checkpoint52b_post MITgcm/verification/global_ocean.cs32x15  ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
29  \rm mdsio_readfield.F  \rm mdsio_readfield.F
30    
31  cd ..  cd ..
32  mkdir build  mkdir build
33  cd build  cd build
34  ../code/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
35  make depend  make depend
36  make  make
37    
38  cd ..  cd ..
39  mkdir run  mkdir run
40  cd run  cd run
41  cp ../inp_thsice/* .  \cp ../input/* .
42  cp ../input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
43  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
44  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
45    
46  comparison output is in:  comparison output is in:
47  ../../../../MITgcm_contrib/high_res_cube/results/output.txt  ../../../../MITgcm_contrib/high_res_cube/results/output.txt
48    
   
49  to use matlab to look at the output  to use matlab to look at the output
50  matlab  matlab
51  % for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
52  for fld={'Eta','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
53      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
54      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
55  end  end
56    
57    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
58    mask=0*heff; mask(find(heff>.001))=1;
59    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
60    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
61    clf
62    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
63    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
64    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
65    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
66    
67    
68    ##########################################################################
69    ##########################################################################
70    # 32*32*6*15, 2-cpu cube sphere on the altices with efc
71    
72    cd MITgcm/verification/global_ocean.cs32x15/code
73    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
74    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
75    \cp SIZE.h_mpi SIZE.h
76    \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
77    \rm mdsio_readfield.F
78    
79    cd ..
80    mkdir build
81    cd build
82    \rm *
83    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
84    make depend
85    make
86    
87    cd ..
88    mkdir run
89    cd run
90    \rm *
91    \cp ../input/* .
92    \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
93    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
94    mpirun -np 2 ../build/mitgcmuv
95    
96    
97    ##########################################################################
98    ##########################################################################
99    # 510*510*6*50, 54-cpu cube sphere on the altices with efc
100    # requires input files in sudirectories run_template and ncep_rgau
101    # presently residing under orion:/tmp1/dmenem/cube
102    
103    cd MITgcm/verification/global_ocean.cs32x15/code
104    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
105    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
106    \cp SIZE.h_54 SIZE.h
107    \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
108    \cp packages.conf_hr packages.conf
109    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
110    \rm mdsio_readfield.F
111    
112    cd ..
113    mkdir build
114    cd build
115    \rm *
116    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
117    make depend
118    make
119    
120    cd ..
121    mkdir run
122    cd run
123    \rm *
124    \cp ../input/* .
125    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
126    qsub job_orion
127    
128    
129    ##########################################################################
130    ##########################################################################
131    # 510*510*6*50, 216-cpu cube sphere on altix with efc
132    # requires input files in sudirectories run_template and ncep_rgau
133    # these can be obained from lou:/u/menemenl/cube
134    
135    cd MITgcm/verification/global_ocean.cs32x15/code
136    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
137    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
138    \cp SIZE.h_216 SIZE.h
139    \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
140    \cp packages.conf_hr packages.conf
141    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
142    \rm mdsio_readfield.F
143    
144    cd ..
145    mkdir build
146    cd build
147    \rm *
148    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
149    make depend
150    make
151    
152    cd ..
153    mkdir run
154    cd run
155    \rm *
156    \cp ../input/* .
157    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
158    qsub job_altix
159    
160    
161    ##########################################################################
162    ##########################################################################
163    # matlab script for generating pChkptFreq
164    
165    nTimeSteps=26352;
166    for niter0=216:26352:(26352*11)
167     pChkptFreq=(niter0+nTimeSteps)*1200;
168     day=pChkptFreq/24/60/60;
169     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
170     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
171    end
172    
173    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
174    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
175    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
176    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
177    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
178    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
179    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
180    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
181    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
182    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
183    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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