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revision 1.3 by dimitri, Mon Nov 24 01:04:28 2003 UTC revision 1.22 by dimitri, Fri Feb 6 21:12:01 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last tested: January 24, 2004.
3    This is the code used for cube2, the second 1992-2002 510x510x6
4    cube-sphere integration.
5    
6    
7    ##########################################################################
8    ##########################################################################
9    # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13    cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice
14    cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods
15    cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter
16    cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input
17    cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results
18    cvs co -r hrcube_2 MITgcm_code
19    cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15
20    
 cvs co MITgcm_contrib/high_res_cube/README_ice  
 cvs co MITgcm_contrib/high_res_cube/code-mods  
 cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co MITgcm_contrib/high_res_cube/input  
 cvs co MITgcm_contrib/high_res_cube/results  
21    
22  cvs co -r checkpoint52a_post MITgcm_code  ##########################################################################
23  cvs co -r checkpoint52a_post MITgcm/verification/global_ocean.cs32x15  ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
28  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
 \rm mdsio_readfield.F  
29    
30  cd ..  cd ..
31  mkdir build  mkdir build
32  cd build  cd build
33  ../code/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
34  make depend  make depend
35  make  make
36    
37  cd ..  cd ..
38  mkdir run  mkdir run
39  cd run  cd run
40  cp ../input/* .  \cp ../input/* .
41  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
42  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
43  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
44    
45  comparison output is in:  comparison output is in:
46  ../../../../MITgcm_contrib/high_res_cube/results/output.txt  ../../../../MITgcm_contrib/high_res_cube/results/output.txt
47    
   
48  to use matlab to look at the output  to use matlab to look at the output
49  matlab  matlab
50  eta=permute(readbin('Eta.0000072020.data',[32,6,32]),[1 3 2]);  
51  cx=[-1 1]; clf  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
52  subplot(3,4, 9);imagesc(flipud(eta(:,:,1)'));caxis(cx);colorbar      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
53  subplot(3,4,10);imagesc(flipud(eta(:,:,2)'));caxis(cx);colorbar      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
54  subplot(3,4, 6);imagesc(flipud(eta(:,:,3)'));caxis(cx);colorbar  end
55  subplot(3,4, 7);imagesc(flipud(eta(:,:,4)'));caxis(cx);colorbar  
56  subplot(3,4, 3);imagesc(flipud(eta(:,:,5)'));caxis(cx);colorbar  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
57  subplot(3,4, 4);imagesc(flipud(eta(:,:,6)'));caxis(cx);colorbar  mask=0*heff; mask(find(heff>.001))=1;
58    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
59    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
60    clf
61    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
62    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
63    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
64    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
65    
66    
67    ##########################################################################
68    ##########################################################################
69    # 32*32*6*15, 2-cpu cube sphere on the altices with efc
70    
71    cd MITgcm/verification/global_ocean.cs32x15/code
72    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
73    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
74    \cp SIZE.h_mpi SIZE.h
75    
76    cd ..
77    mkdir build
78    cd build
79    \rm *
80    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
81    make depend
82    make
83    
84    cd ..
85    mkdir run
86    cd run
87    \rm *
88    \cp ../input/* .
89    \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
90    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
91    mpirun -np 2 ../build/mitgcmuv
92    
93    
94    ##########################################################################
95    ##########################################################################
96    # 510*510*6*50, 54-cpu cube sphere on the altices with efc
97    # requires input files in sudirectories run_template and ncep_rgau
98    # presently residing under orion:/tmp1/dmenem/cube
99    
100    cd MITgcm/verification/global_ocean.cs32x15/code
101    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
102    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
103    \cp SIZE.h_54 SIZE.h
104    \cp packages.conf_hr packages.conf
105    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
106    
107    cd ..
108    mkdir build
109    cd build
110    \rm *
111    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
112    make depend
113    make
114    
115    cd ..
116    mkdir run
117    cd run
118    \rm *
119    \cp ../input/* .
120    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
121    qsub job_orion
122    
123    
124    ##########################################################################
125    ##########################################################################
126    # 510*510*6*50, 216-cpu cube sphere on altix with efc
127    # requires input files in sudirectories run_template and ncep_rgau
128    # these can be obained from lou:/u/menemenl/cube
129    
130    cd MITgcm/verification/global_ocean.cs32x15/code
131    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
132    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
133    \cp SIZE.h_216 SIZE.h
134    \cp packages.conf_hr packages.conf
135    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
136    
137    cd ..
138    mkdir build
139    cd build
140    \rm *
141    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
142    make depend
143    make
144    
145    cd ..
146    mkdir run
147    cd run
148    \rm *
149    \cp ../input/* .
150    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151    qsub job_altix
152    
153    
154    ##########################################################################
155    ##########################################################################
156    # matlab script for generating pChkptFreq
157    
158    nTimeSteps=26352;
159    for niter0=216:26352:(26352*11)
160     pChkptFreq=(niter0+nTimeSteps)*1200;
161     day=pChkptFreq/24/60/60;
162     disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
163     datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])
164    end
165    
166    niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600
167    niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000
168    niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400
169    niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800
170    niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200
171    niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600
172    niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000
173    niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400
174    niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
175    niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
176    niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
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