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revision 1.34 by dimitri, Fri Mar 26 19:02:13 2004 UTC revision 1.43 by dimitri, Tue Sep 7 08:26:05 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 9, 2004.  Date last tested: July 9, 2004.
3  Code and input used for integrating cube5.  Code and input used for integrating cube9.
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/edge_problem
15  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results  cvs co MITgcm_code
16  cvs co -r hrcube5 MITgcm_code  cvs co MITgcm/verification/global_ocean.cs32x15
17  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/testreport
18    
19    
20  ##########################################################################  ##########################################################################
# Line 24  cvs co -r hrcube5 MITgcm/verification/gl Line 24  cvs co -r hrcube5 MITgcm/verification/gl
24  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
26  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
27  cd ../build  cd ../build
28    \rm *
29  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
30  make depend  make depend
31  make  make
32    cd ..
33    mkdir run
34    cd run
35    \rm *
36    \cp ../input/* .
37    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
38    ../build/mitgcmuv >& output.txt
39    
40    comparison output is in:
41    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
42    
43    to use matlab to look at the output
44    matlab
45    
46    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72    make depend
73    make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77    \rm *
78  \cp ../input/* .  \cp ../input/* .
79  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 70  cd MITgcm/verification/global_ocean.cs32 Line 112  cd MITgcm/verification/global_ocean.cs32
112    
113  cd ../build  cd ../build
114  \rm *  \rm *
115  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
116  make depend  make depend
117  make  make -j
118    
119  cd ..  cd ..
120  mkdir run  mkdir run
# Line 85  mpirun -np 2 ../build/mitgcmuv Line 127  mpirun -np 2 ../build/mitgcmuv
127    
128  ##########################################################################  ##########################################################################
129  ##########################################################################  ##########################################################################
130  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
131    # starting with pickup file from end of 1992
132    # requires input files in sudirectories run_template and ncep_rgau
133    
134    cd MITgcm/verification/global_ocean.cs32x15/code
135    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
136    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
137    \cp packages.conf_hr packages.conf
138    
139    cd ../build
140    \rm *
141    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
142    make depend
143    make -j
144    
145    cd ..
146    mkdir run
147    cd run
148    \rm *
149    \cp ../input/* .
150    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151    qsub job_altix92_54t
152    
153    
154    ##########################################################################
155    ##########################################################################
156    # 510*510*6*50, 216-cpu cube sphere on altix with efc
157    # requires input files in sudirectories run_template and ncep_rgau
158    # these can be obained from lou:/u/menemenl/cube
159    
160    cd MITgcm/verification/global_ocean.cs32x15/code
161    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
162    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
163    \cp SIZE.h_216 SIZE.h
164    \cp packages.conf_hr packages.conf
165    
166    cd ../build
167    \rm *
168    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
169    make depend
170    make -j 16
171    
172    cd ..
173    mkdir run
174    cd run
175    \rm *
176    \cp ../input/* .
177    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
178    qsub job_altix92
179    
180    
181    
182    
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    ##########################################################################
198    ##########################################################################
199    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
200  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
201  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
202    
# Line 97  cd MITgcm/verification/global_ocean.cs32 Line 208  cd MITgcm/verification/global_ocean.cs32
208    
209  cd ../build  cd ../build
210  \rm *  \rm *
211  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
212  make depend  make depend
213  make  make -j
214    
215  cd ..  cd ..
216  mkdir run  mkdir run
# Line 124  cd MITgcm/verification/global_ocean.cs32 Line 235  cd MITgcm/verification/global_ocean.cs32
235    
236  cd ../build  cd ../build
237  \rm *  \rm *
238  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
239  make depend  make depend
240  make  make -j
241    
242  cd ..  cd ..
243  mkdir run  mkdir run
# Line 139  qsub job_orion41 Line 250  qsub job_orion41
250    
251  ##########################################################################  ##########################################################################
252  ##########################################################################  ##########################################################################
253  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
254  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
255  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
256    
257  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
258  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
259  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
260  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
261  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
262    
263  cd ../build  cd ../build
264  \rm *  \rm *
265  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
266  make depend  make depend
267  make  make -j
268    
269  cd ..  cd ..
270  mkdir run  mkdir run
# Line 161  cd run Line 272  cd run
272  \rm *  \rm *
273  \cp ../input/* .  \cp ../input/* .
274  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275  qsub job_altix  qsub job_orion
276    
277    
278  ##########################################################################  ##########################################################################
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