/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.41 by dimitri, Fri Jul 9 23:54:52 2004 UTC revision 1.55 by dimitri, Mon Feb 21 19:15:01 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: July 9, 2004.  Date last updated: February 17, 2005
3  Code and input used for integrating cube9.  Code and input used for integrating cube22.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 11  cvs co MITgcm_contrib/high_res_cube/READ Line 11  cvs co MITgcm_contrib/high_res_cube/READ
11  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_contrib/edge_problem  cvs co MITgcm_code
15  cvs co -r checkpoint54b_post MITgcm_code  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r checkpoint54b_post MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/testreport
 cvs co -r checkpoint54b_post MITgcm/verification/testreport  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 43  comparison output is in: Line 42  comparison output is in:
42  to use matlab to look at the output  to use matlab to look at the output
43  matlab  matlab
44    
45  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46             'QNETtave','FVtave','FUtave','EmPmRtave'}
47      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49  end  end
50    
51  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
53  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55  clf  clf
56  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60    
61    
62  ##########################################################################  ##########################################################################
# Line 79  cd run Line 79  cd run
79  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
81    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
   
 to use matlab to look at the output  
 matlab  
   
 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  
     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  
 end  
   
 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  
 mask=0*heff; mask(find(heff>.001))=1;  
 uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 clf  
 subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
 subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  
 subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  
 subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  
   
82    
83  ##########################################################################  ##########################################################################
84  ##########################################################################  ##########################################################################
# Line 112  cd MITgcm/verification/global_ocean.cs32 Line 91  cd MITgcm/verification/global_ocean.cs32
91    
92  cd ../build  cd ../build
93  \rm *  \rm *
94  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95  make depend  make depend
96  make -j  make -j
97    
# Line 127  mpirun -np 2 ../build/mitgcmuv Line 106  mpirun -np 2 ../build/mitgcmuv
106    
107  ##########################################################################  ##########################################################################
108  ##########################################################################  ##########################################################################
 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  
 # requires input files in sudirectories run_template and ncep_rgau  
 # presently residing under orion:/tmp1/dmenem/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_54 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 qsub job_orion  
   
   
 ##########################################################################  
 ##########################################################################  
109  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
110  # starting with pickup file from end of 1992  # starting with pickup file from end of 1992
111  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
# Line 180  qsub job_altix92_54t Line 132  qsub job_altix92_54t
132    
133  ##########################################################################  ##########################################################################
134  ##########################################################################  ##########################################################################
135  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
137  # these can be obained from lou:/u/menemenl/cube  # these can be obained from lou:/u/menemenl/cube
138    
# Line 192  cd MITgcm/verification/global_ocean.cs32 Line 144  cd MITgcm/verification/global_ocean.cs32
144    
145  cd ../build  cd ../build
146  \rm *  \rm *
147  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148  make depend  make depend
149  make -j  make -j
150    
# Line 202  cd run Line 154  cd run
154  \rm *  \rm *
155  \cp ../input/* .  \cp ../input/* .
156  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157    ln -sf ../../../../run_template/* .
158    \rm pickup*
159    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161    \cp ../build/mitgcmuv .
162  qsub job_altix92  qsub job_altix92
163    
164    
# Line 226  qsub job_altix92 Line 183  qsub job_altix92
183    
184    
185    
186    ##########################################################################
187    ##########################################################################
188    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
189    # requires input files in sudirectories run_template and ncep_rgau
190    # presently residing under orion:/tmp1/dmenem/cube
191    
192    cd MITgcm/verification/global_ocean.cs32x15/code
193    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
194    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
195    \cp SIZE.h_54 SIZE.h
196    \cp packages.conf_hr packages.conf
197    
198    cd ../build
199    \rm *
200    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
201    make depend
202    make -j
203    
204    cd ..
205    mkdir run
206    cd run
207    \rm *
208    \cp ../input/* .
209    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
210    qsub job_orion
211    
212    
213  ##########################################################################  ##########################################################################
# Line 308  niter0 = 211032, day = 3297, 10-Jan-2001 Line 288  niter0 = 211032, day = 3297, 10-Jan-2001
288  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
289  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
290  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
291    
292    
293    
294    
295    
296    
297    #!/bin/csh
298    \cp data.pkg_hr data.pkg
299    \cp data.seaice_hr data.seaice
300    \cp data.exf_clim_hr data.exf_clim
301    
302    \cp data_hr92 data
303    ./modpickup
304    \cp data.exf_hr92 data.exf
305    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
306    mkdir out.1992
307    \mv STDOUT.0000 *.data pickup*.meta out.1992
308    \cp data* out.1992
309    \rm STD* *.meta
310    
Legend:
Removed from v.1.41  
changed lines
  Added in v.1.55
  ViewVC Help
Powered by ViewVC 1.1.22