/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.41 by dimitri, Fri Jul 9 23:54:52 2004 UTC revision 1.57 by dimitri, Tue Feb 22 01:20:54 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: July 9, 2004.  Date last updated: February 17, 2005
3  Code and input used for integrating cube9.  Code and input used for integrating cube22.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 11  cvs co MITgcm_contrib/high_res_cube/READ Line 11  cvs co MITgcm_contrib/high_res_cube/READ
11  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_contrib/edge_problem  cvs co MITgcm_code
15  cvs co -r checkpoint54b_post MITgcm_code  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r checkpoint54b_post MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/testreport
 cvs co -r checkpoint54b_post MITgcm/verification/testreport  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 43  comparison output is in: Line 42  comparison output is in:
42  to use matlab to look at the output  to use matlab to look at the output
43  matlab  matlab
44    
45  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46             'QNETtave','FVtave','FUtave','EmPmRtave'}
47      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49  end  end
50    
51  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
53  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55  clf  clf
56  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60    
61    
62  ##########################################################################  ##########################################################################
# Line 79  cd run Line 79  cd run
79  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
81    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
82    
83  to use matlab to look at the output  ##########################################################################
84  matlab  ##########################################################################
85    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
86    
87  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  cd MITgcm/verification/global_ocean.cs32x15/code
88      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
89      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
90  end  \cp SIZE.h_mpi SIZE.h
91    
92  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  cd ../build
93  mask=0*heff; mask(find(heff>.001))=1;  \rm *
94  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  make depend
96  clf  make -j
97  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
98  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  cd ..
99  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  mkdir run
100  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  cd run
101    \rm *
102    \cp ../input/* .
103    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104    mpirun -np 2 ../build/mitgcmuv
105    
106    
107  ##########################################################################  ##########################################################################
108  ##########################################################################  ##########################################################################
109  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
110    # starting with pickup file from end of 1992
111    # requires input files in sudirectories run_template and ncep_rgau
112    
113  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
114  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
115  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
116  \cp SIZE.h_mpi SIZE.h  \cp packages.conf_hr packages.conf
117    
118  cd ../build  cd ../build
119  \rm *  \rm *
# Line 122  cd run Line 127  cd run
127  \rm *  \rm *
128  \cp ../input/* .  \cp ../input/* .
129  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
130  mpirun -np 2 ../build/mitgcmuv  qsub job_altix92_54t
131    
132    
133  ##########################################################################  ##########################################################################
134  ##########################################################################  ##########################################################################
135  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
137  # presently residing under orion:/tmp1/dmenem/cube  # these can be obained from lou:/u/menemenl/cube
138    
139  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
140  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
141  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
142  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_216 SIZE.h
143  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
144    
145  cd ../build  cd ../build
146  \rm *  \rm *
147  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148  make depend  make depend
149  make -j  make -j
150    
# Line 149  cd run Line 154  cd run
154  \rm *  \rm *
155  \cp ../input/* .  \cp ../input/* .
156  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157  qsub job_orion  ln -sf ../../../../run_template/* .
158    \rm pickup*
159    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161    \cp ../build/mitgcmuv .
162    qsub job_altix
163    
164    
165  ##########################################################################  ##########################################################################
166  ##########################################################################  ##########################################################################
167  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
168  # starting with pickup file from end of 1992  # uses s1500t_17x51 configuration
169  # requires input files in sudirectories run_template and ncep_rgau  # example for running on c17-c20 using arrayd
170    
171  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
172  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
173  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
174    \cp SIZE.h_375 SIZE.h
175  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
176    
177  cd ../build  cd ../build
178  \rm *  \rm *
179  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
180  make depend  make depend
181  make -j  make -j
182    
# Line 175  cd run Line 186  cd run
186  \rm *  \rm *
187  \cp ../input/* .  \cp ../input/* .
188  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
189  qsub job_altix92_54t  ln -sf ../../../../run_template/* .
190    \rm pickup*
191    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
192    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
193    \cp ../build/mitgcmuv .
194    job_c20_375cpu < /dev/null >&! output.run &
195    
196    
197  ##########################################################################  ##########################################################################
198  ##########################################################################  ##########################################################################
199  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 500-cpu, excludes land
200  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
201  # these can be obained from lou:/u/menemenl/cube  # example for running on c17-c20 using arrayd
202    
203  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
204  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
205  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
206  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_500 SIZE.h
207  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
208    
209  cd ../build  cd ../build
210  \rm *  \rm *
211  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
212  make depend  make depend
213  make -j  make -j
214    
# Line 202  cd run Line 218  cd run
218  \rm *  \rm *
219  \cp ../input/* .  \cp ../input/* .
220  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
221  qsub job_altix92  ln -sf ../../../../run_template/* .
222    \rm pickup*
223    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
224    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
225    \cp ../build/mitgcmuv .
226    job_c19_500cpu < /dev/null >&! output.run &
227    
228    
229    
# Line 227  qsub job_altix92 Line 248  qsub job_altix92
248    
249    
250    
251    ##########################################################################
252    ##########################################################################
253    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
254    # requires input files in sudirectories run_template and ncep_rgau
255    # presently residing under orion:/tmp1/dmenem/cube
256    
257    cd MITgcm/verification/global_ocean.cs32x15/code
258    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
259    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
260    \cp SIZE.h_54 SIZE.h
261    \cp packages.conf_hr packages.conf
262    
263    cd ../build
264    \rm *
265    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
266    make depend
267    make -j
268    
269    cd ..
270    mkdir run
271    cd run
272    \rm *
273    \cp ../input/* .
274    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275    qsub job_orion
276    
277    
278  ##########################################################################  ##########################################################################
# Line 282  cd run Line 327  cd run
327  \cp ../input/* .  \cp ../input/* .
328  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
329  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
Legend:
Removed from v.1.41  
changed lines
  Added in v.1.57
  ViewVC Help
Powered by ViewVC 1.1.22