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revision 1.36 by dimitri, Sun Mar 28 09:28:21 2004 UTC revision 1.47 by dimitri, Wed Dec 22 17:22:05 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 28, 2004.  Date last tested: July 9, 2004.
3  Code and input used for integrating cube5.  Code and input used for integrating cube9.
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_code
15  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube5 MITgcm_code  cvs co MITgcm/verification/testreport
 cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 24  cvs co -r hrcube5 MITgcm/verification/gl Line 23  cvs co -r hrcube5 MITgcm/verification/gl
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
26  cd ../build  cd ../build
27    \rm *
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48    end
49    
50    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51    mask=0*heff; mask(find(heff>.001))=1;
52    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    clf
55    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61    ##########################################################################
62    ##########################################################################
63    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65    cd MITgcm/verification/global_ocean.cs32x15/code
66    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67    \cp ../code_alt/code.176t_8x4/* .
68    cd ../build
69    \rm *
70    ../../../tools/genmake2 -mods=../code
71    make depend
72    make
73  cd ..  cd ..
74  mkdir run  mkdir run
75  cd run  cd run
76    \rm *
77  \cp ../input/* .  \cp ../input/* .
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 70  cd MITgcm/verification/global_ocean.cs32 Line 111  cd MITgcm/verification/global_ocean.cs32
111    
112  cd ../build  cd ../build
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
# Line 85  mpirun -np 2 ../build/mitgcmuv Line 126  mpirun -np 2 ../build/mitgcmuv
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
132    
133  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
136  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
137    
138  cd ../build  cd ../build
139  \rm *  \rm *
140  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141  make depend  make depend
142  make  make -j
143    
144  cd ..  cd ..
145  mkdir run  mkdir run
# Line 107  cd run Line 147  cd run
147  \rm *  \rm *
148  \cp ../input/* .  \cp ../input/* .
149  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150  qsub job_orion  qsub job_altix92_54t
151    
152    
153  ##########################################################################  ##########################################################################
154  ##########################################################################  ##########################################################################
155  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort
 # starting with pickup file from end of 1992  
156  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
157  # presently residing under orion:/tmp1/dmenem/cube  # these can be obained from lou:/u/menemenl/cube
158    
159  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162    \cp SIZE.h_216 SIZE.h
163  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
164    
165  cd ../build  cd ../build
166  \rm *  \rm *
167  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168  make depend  make depend
169  make  make -j 4
170    
171  cd ..  cd ..
172  mkdir run  mkdir run
# Line 134  cd run Line 174  cd run
174  \rm *  \rm *
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177  qsub job_altix93_newIO  ln -sf ../../../../run_template/* .
178    ln -sf pickup.0000290088.data.cube10 pickup.0000000216.data
179    ln -sf pickup_seaice.0000290088.data.cube10 pickup_seaice.0000000216.data
180    \cp ../build/mitgcmuv .
181    qsub job_altix92
182    
183    
184    
185    
186    
187    
188    
189    
190    
191    
192    
193    
194    
195    
196    
197    
198    
199    
200  ##########################################################################  ##########################################################################
201  ##########################################################################  ##########################################################################
202  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
203  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
204  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
205    
206  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
207  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
208  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
209  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_54 SIZE.h
210  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
211    
212  cd ../build  cd ../build
213  \rm *  \rm *
214  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215  make depend  make depend
216  make  make -j
217    
218  cd ..  cd ..
219  mkdir run  mkdir run
# Line 161  cd run Line 221  cd run
221  \rm *  \rm *
222  \cp ../input/* .  \cp ../input/* .
223  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224  qsub job_orion41  qsub job_orion
225    
226    
227  ##########################################################################  ##########################################################################
228  ##########################################################################  ##########################################################################
229  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
230  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
231  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
232    
233  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
234  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
236  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_41 SIZE.h
237  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
238    
239  cd ../build  cd ../build
240  \rm *  \rm *
241  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
242  make depend  make depend
243  make  make -j
244    
245  cd ..  cd ..
246  mkdir run  mkdir run
# Line 188  cd run Line 248  cd run
248  \rm *  \rm *
249  \cp ../input/* .  \cp ../input/* .
250  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251  qsub job_orion  qsub job_orion41
252    
253    
254  ##########################################################################  ##########################################################################
255  ##########################################################################  ##########################################################################
256  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
257  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
258  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
259    
260  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
261  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
262  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
263  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
264  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
265    
266  cd ../build  cd ../build
267  \rm *  \rm *
268  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
269  make depend  make depend
270  make  make -j
271    
272  cd ..  cd ..
273  mkdir run  mkdir run
# Line 215  cd run Line 275  cd run
275  \rm *  \rm *
276  \cp ../input/* .  \cp ../input/* .
277  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
278  qsub job_altix  qsub job_orion
279    
280    
281  ##########################################################################  ##########################################################################
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