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revision 1.35 by dimitri, Sun Mar 28 08:49:44 2004 UTC revision 1.51 by dimitri, Thu Feb 10 20:47:06 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 9, 2004.  Date last tested: July 9, 2004.
3  Code and input used for integrating cube5.  Code and input used for integrating cube9.
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input  cvs co MITgcm_code
15  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube5 MITgcm_code  cvs co MITgcm/verification/testreport
 cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 24  cvs co -r hrcube5 MITgcm/verification/gl Line 23  cvs co -r hrcube5 MITgcm/verification/gl
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
26  cd ../build  cd ../build
27    \rm *
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}
46        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48    end
49    
50    heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);
51    mask=0*heff; mask(find(heff>.001))=1;
52    uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);
53    vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);
54    clf
55    subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')
56    subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')
57    subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')
58    subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')
59    
60    
61    ##########################################################################
62    ##########################################################################
63    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
64    
65    cd MITgcm/verification/global_ocean.cs32x15/code
66    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
67    \cp ../code_alt/code.176t_8x4/* .
68    cd ../build
69    \rm *
70    ../../../tools/genmake2 -mods=../code
71    make depend
72    make
73  cd ..  cd ..
74  mkdir run  mkdir run
75  cd run  cd run
76    \rm *
77  \cp ../input/* .  \cp ../input/* .
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 70  cd MITgcm/verification/global_ocean.cs32 Line 111  cd MITgcm/verification/global_ocean.cs32
111    
112  cd ../build  cd ../build
113  \rm *  \rm *
114  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
115  make depend  make depend
116  make  make -j
117    
118  cd ..  cd ..
119  mkdir run  mkdir run
# Line 85  mpirun -np 2 ../build/mitgcmuv Line 126  mpirun -np 2 ../build/mitgcmuv
126    
127  ##########################################################################  ##########################################################################
128  ##########################################################################  ##########################################################################
129  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
130    # starting with pickup file from end of 1992
131  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
 # presently residing under orion:/tmp1/dmenem/cube  
132    
133  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
134  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
135  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
 \cp SIZE.h_54 SIZE.h  
136  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
137    
138  cd ../build  cd ../build
139  \rm *  \rm *
140  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
141  make depend  make depend
142  make  make -j
143    
144  cd ..  cd ..
145  mkdir run  mkdir run
# Line 107  cd run Line 147  cd run
147  \rm *  \rm *
148  \cp ../input/* .  \cp ../input/* .
149  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
150  qsub job_orion  qsub job_altix92_54t
151    
152    
153  ##########################################################################  ##########################################################################
154  ##########################################################################  ##########################################################################
155  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort
156  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
157  # presently residing under orion:/tmp1/dmenem/cube  # these can be obained from lou:/u/menemenl/cube
158    
159  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
160  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
161  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
162    \cp SIZE.h_216 SIZE.h
163  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
164    
165  cd ../build  cd ../build
166  \rm *  \rm *
167  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
168  make depend  make depend
169  make  make -j 4
170    
171  cd ..  cd ..
172  mkdir run  mkdir run
# Line 133  cd run Line 174  cd run
174  \rm *  \rm *
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177  qsub job_orion  ln -sf ../../../../run_template/* .
178    \rm pickup*
179    ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
180    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
181    \cp ../build/mitgcmuv .
182    qsub job_altix92
183    
184    
185    
186    
187    
188    
189  ##########################################################################  ##########################################################################
190  ##########################################################################  ##########################################################################
191  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
192    # requires input files in sudirectories run_template and ncep_rgau
193    # these can be obained from lou:/u/menemenl/cube
194    
195    cd MITgcm/verification/global_ocean.cs32x15/code
196    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
197    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
198    \cp SIZE.h_216 SIZE.h
199    \cp packages.conf_diagnostics packages.conf
200    
201    cd ../build
202    \rm *
203    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
204    make depend
205    make -j 4
206    
207    cd ..
208    mkdir run
209    cd run
210    \rm *
211    \cp ../input/* .
212    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
213    ln -sf ../../../../run_template/* .
214    \rm pickup*
215    ln -sf ../../../../run_template/pickup.0000316440.cube20 pickup.0000000216.data
216    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube20 pickup_seaice.0000000216.data
217    \cp ../build/mitgcmuv .
218    qsub job_altix92
219    
220    
221    
222    
223    
224    
225    
226    
227    
228    
229    
230    
231    
232    
233    
234    
235    
236    
237    ##########################################################################
238    ##########################################################################
239    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
240  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
241  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
242    
243  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
244  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
245  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
246  \cp SIZE.h_41 SIZE.h  \cp SIZE.h_54 SIZE.h
247  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
248    
249  cd ../build  cd ../build
250  \rm *  \rm *
251  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
252  make depend  make depend
253  make  make -j
254    
255  cd ..  cd ..
256  mkdir run  mkdir run
# Line 160  cd run Line 258  cd run
258  \rm *  \rm *
259  \cp ../input/* .  \cp ../input/* .
260  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
261  qsub job_orion41  qsub job_orion
262    
263    
264  ##########################################################################  ##########################################################################
265  ##########################################################################  ##########################################################################
266  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
267  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
268  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
269    
270  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
271  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
272  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
273  \cp SIZE.h_50 SIZE.h  \cp SIZE.h_41 SIZE.h
274  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
275    
276  cd ../build  cd ../build
277  \rm *  \rm *
278  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
279  make depend  make depend
280  make  make -j
281    
282  cd ..  cd ..
283  mkdir run  mkdir run
# Line 187  cd run Line 285  cd run
285  \rm *  \rm *
286  \cp ../input/* .  \cp ../input/* .
287  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
288  qsub job_orion  qsub job_orion41
289    
290    
291  ##########################################################################  ##########################################################################
292  ##########################################################################  ##########################################################################
293  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
294  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
295  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
296    
297  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
298  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
299  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
300  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
301  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
302    
303  cd ../build  cd ../build
304  \rm *  \rm *
305  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
306  make depend  make depend
307  make  make -j
308    
309  cd ..  cd ..
310  mkdir run  mkdir run
# Line 214  cd run Line 312  cd run
312  \rm *  \rm *
313  \cp ../input/* .  \cp ../input/* .
314  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
315  qsub job_altix  qsub job_orion
316    
317    
318  ##########################################################################  ##########################################################################
# Line 241  niter0 = 211032, day = 3297, 10-Jan-2001 Line 339  niter0 = 211032, day = 3297, 10-Jan-2001
339  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
340  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
341  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
342    
343    
344    
345    
346    
347    
348    #!/bin/csh
349    \cp data.pkg_hr data.pkg
350    \cp data.seaice_hr data.seaice
351    \cp data.exf_clim_hr data.exf_clim
352    
353    \cp data_hr92 data
354    ./modpickup
355    \cp data.exf_hr92 data.exf
356    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
357    mkdir out.1992
358    \mv STDOUT.0000 *.data pickup*.meta out.1992
359    \cp data* out.1992
360    \rm STD* *.meta
361    
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