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revision 1.20 by dimitri, Sun Jan 25 06:33:20 2004 UTC revision 1.55 by dimitri, Mon Feb 21 19:15:01 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: January 24, 2004.  Date last updated: February 17, 2005
3  This is the code used for cube2 the second 1992-2002 510x510x6  Code and input used for integrating cube22.
 cube-sphere integration.  
4    
5    
6  ##########################################################################  ##########################################################################
7  ##########################################################################  ##########################################################################
8  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
9    
10  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs login ( CVS password: cvsanon )  cvs co MITgcm_contrib/high_res_cube/code-mods
12  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co MITgcm_code
15  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/input  cvs co MITgcm/verification/global_ocean.cs32x15
16  cvs co -r hrcube_2 MITgcm_contrib/high_res_cube/results  cvs co MITgcm/verification/testreport
 cvs co -r hrcube_2 MITgcm_code  
 cvs co -r hrcube_2 MITgcm/verification/global_ocean.cs32x15  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 25  cvs co -r hrcube_2 MITgcm/verification/g Line 22  cvs co -r hrcube_2 MITgcm/verification/g
22    
23  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
24  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26    cd ../build
27  cd ..  \rm *
 mkdir build  
 cd build  
28  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
   
31  cd ..  cd ..
32  mkdir run  mkdir run
33  cd run  cd run
34    \rm *
35  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
36  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
38    
# Line 48  comparison output is in: Line 42  comparison output is in:
42  to use matlab to look at the output  to use matlab to look at the output
43  matlab  matlab
44    
45  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46             'QNETtave','FVtave','FUtave','EmPmRtave'}
47      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49  end  end
50    
51  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
53  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55  clf  clf
56  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72    make depend
73    make
74    cd ..
75    mkdir run
76    cd run
77    \rm *
78    \cp ../input/* .
79    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80    ../build/mitgcmuv >& output.txt
81    
82    
83  ##########################################################################  ##########################################################################
# Line 70  subplot(224), mypcolor(vice(:,:,6)'), co Line 86  subplot(224), mypcolor(vice(:,:,6)'), co
86    
87  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
88  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
89  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
90  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_mpi SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
91    
92  cd ..  cd ../build
 mkdir build  
 cd build  
93  \rm *  \rm *
94  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95  make depend  make depend
96  make  make -j
97    
98  cd ..  cd ..
99  mkdir run  mkdir run
100  cd run  cd run
101  \rm *  \rm *
102  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
103  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
105    
106    
107  ##########################################################################  ##########################################################################
108  ##########################################################################  ##########################################################################
109  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
110    # starting with pickup file from end of 1992
111    # requires input files in sudirectories run_template and ncep_rgau
112    
113    cd MITgcm/verification/global_ocean.cs32x15/code
114    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
115    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
116    \cp packages.conf_hr packages.conf
117    
118    cd ../build
119    \rm *
120    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
121    make depend
122    make -j
123    
124    cd ..
125    mkdir run
126    cd run
127    \rm *
128    \cp ../input/* .
129    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
130    qsub job_altix92_54t
131    
132    
133    ##########################################################################
134    ##########################################################################
135    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136    # requires input files in sudirectories run_template and ncep_rgau
137    # these can be obained from lou:/u/menemenl/cube
138    
139    cd MITgcm/verification/global_ocean.cs32x15/code
140    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
141    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
142    \cp SIZE.h_216 SIZE.h
143    \cp packages.conf_hr packages.conf
144    
145    cd ../build
146    \rm *
147    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148    make depend
149    make -j
150    
151    cd ..
152    mkdir run
153    cd run
154    \rm *
155    \cp ../input/* .
156    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157    ln -sf ../../../../run_template/* .
158    \rm pickup*
159    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161    \cp ../build/mitgcmuv .
162    qsub job_altix92
163    
164    
165    
166    
167    
168    
169    
170    
171    
172    
173    
174    
175    
176    
177    
178    
179    
180    
181    
182    
183    
184    
185    
186    ##########################################################################
187    ##########################################################################
188    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
189  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
190  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
191    
# Line 102  cd MITgcm/verification/global_ocean.cs32 Line 193  cd MITgcm/verification/global_ocean.cs32
193  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
194  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
195  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
196  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
 \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
197    
198  cd ..  cd ../build
 mkdir build  
 cd build  
199  \rm *  \rm *
200  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
201  make depend  make depend
202  make  make -j
203    
204  cd ..  cd ..
205  mkdir run  mkdir run
# Line 125  qsub job_orion Line 212  qsub job_orion
212    
213  ##########################################################################  ##########################################################################
214  ##########################################################################  ##########################################################################
215  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
216  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
217  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
218    
219  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
220  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
221  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
222  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_41 SIZE.h
 \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  
223  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
224  \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F  
225    cd ../build
226    \rm *
227    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
228    make depend
229    make -j
230    
231  cd ..  cd ..
232  mkdir build  mkdir run
233  cd build  cd run
234    \rm *
235    \cp ../input/* .
236    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
237    qsub job_orion41
238    
239    
240    ##########################################################################
241    ##########################################################################
242    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
243    # requires input files in sudirectories run_template and ncep_rgau
244    # presently residing under orion:/tmp1/dmenem/cube
245    
246    cd MITgcm/verification/global_ocean.cs32x15/code
247    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249    \cp SIZE.h_50 SIZE.h
250    \cp packages.conf_hr packages.conf
251    
252    cd ../build
253  \rm *  \rm *
254  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
255  make depend  make depend
256  make  make -j
257    
258  cd ..  cd ..
259  mkdir run  mkdir run
# Line 151  cd run Line 261  cd run
261  \rm *  \rm *
262  \cp ../input/* .  \cp ../input/* .
263  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264  qsub job_altix  qsub job_orion
265    
266    
267  ##########################################################################  ##########################################################################
# Line 159  qsub job_altix Line 269  qsub job_altix
269  # matlab script for generating pChkptFreq  # matlab script for generating pChkptFreq
270    
271  nTimeSteps=26352;  nTimeSteps=26352;
272  for niter0=216:26352:(26352*11)  for niter0=216:26352:(26352*12)
273   pChkptFreq=(niter0+nTimeSteps)*1200;   pChkptFreq=(niter0+nTimeSteps)*1200;
274   day=pChkptFreq/24/60/60;   day=pChkptFreq/24/60/60;
275   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...   disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...
# Line 177  niter0 = 184680, day = 2931, 10-Jan-2000 Line 287  niter0 = 184680, day = 2931, 10-Jan-2000
287  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800
288  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200
289  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600
290    niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000
291    
292    
293    
294    
295    
296    
297    #!/bin/csh
298    \cp data.pkg_hr data.pkg
299    \cp data.seaice_hr data.seaice
300    \cp data.exf_clim_hr data.exf_clim
301    
302    \cp data_hr92 data
303    ./modpickup
304    \cp data.exf_hr92 data.exf
305    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv
306    mkdir out.1992
307    \mv STDOUT.0000 *.data pickup*.meta out.1992
308    \cp data* out.1992
309    \rm STD* *.meta
310    
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