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revision 1.55 by dimitri, Mon Feb 21 19:15:01 2005 UTC revision 1.69 by dimitri, Tue Oct 10 23:27:04 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 39  cvs co MITgcm_contrib/high_res_cube/inpu
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 61  subplot(224), mypcolor(vice(:,:,6)'); co Line 88  subplot(224), mypcolor(vice(:,:,6)'); co
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia\
105    64_ifort+mpi_altix_nas
106    make depend
107    make -j
108    
109    cd ..
110    mkdir run
111    cd run
112    \rm *
113    \cp ../input/* .
114    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115    ln -sf ../../../../run_template/* .
116    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
118    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
120    \cp ../build/mitgcmuv .
121    qsub job_altix
122    
123    
124    ##########################################################################
125    ##########################################################################
126  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
127    
128  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 75  cd .. Line 137  cd ..
137  mkdir run  mkdir run
138  cd run  cd run
139  \rm *  \rm *
140    \cp ../../tutorial_held_suarez_cs/input/grid* .
141  \cp ../input/* .  \cp ../input/* .
142  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
143  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 82  cd run Line 145  cd run
145    
146  ##########################################################################  ##########################################################################
147  ##########################################################################  ##########################################################################
148  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
149    
150  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
151  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 99  cd .. Line 162  cd ..
162  mkdir run  mkdir run
163  cd run  cd run
164  \rm *  \rm *
165    \cp ../../tutorial_held_suarez_cs/input/grid* .
166  \cp ../input/* .  \cp ../input/* .
167  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 196  qsub job_altix92_54t
196    
197  ##########################################################################  ##########################################################################
198  ##########################################################################  ##########################################################################
199  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
200  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
201    
202  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
203  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
204  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
205  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
206  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
207    
208  cd ../build  cd ../build
# Line 156  cd run Line 219  cd run
219  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
220  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
221  \rm pickup*  \rm pickup*
222  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
223  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
224  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
225  qsub job_altix92  qsub job_altix150
226    
227    
228    ##########################################################################
229    ##########################################################################
230    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
231    # uses s1500t_17x51 configuration
232    # example for running on c17-c20 using arrayd
233    
234    cd MITgcm/verification/global_ocean.cs32x15/code
235    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237    \cp SIZE.h_375 SIZE.h
238    \cp packages.conf_hr packages.conf
239    
240    cd ../build
241    \rm *
242    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243    make depend
244    make -j
245    
246    cd ..
247    mkdir run
248    cd run
249    \rm *
250    \cp ../input/* .
251    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252    ln -sf ../../../../run_template/* .
253    \rm pickup*
254    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256    \cp ../build/mitgcmuv .
257    job_c20_375cpu < /dev/null >&! output.run &
258    
259    
260    ##########################################################################
261    ##########################################################################
262    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
263    # uses s1500t_17x51 configuration
264    # example for running on c17-c20 using arrayd
265    
266    cd MITgcm/verification/global_ocean.cs32x15/code
267    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269    \cp SIZE.h_375 SIZE.h
270    \cp packages.conf_hr packages.conf
271    
272    cd ../build
273    \rm *
274    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275    make depend
276    make -j
277    
278    cd ..
279    mkdir run
280    cd run
281    \rm *
282    \cp ../input/* .
283    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284    ln -sf ../../../../run_template/* .
285    \rm pickup*
286    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288    \cp ../build/mitgcmuv .
289    job_c20_375cpu < /dev/null >&! output.run &
290    
291    
292    ##########################################################################
293    ##########################################################################
294    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
295    # uses s1500t_17x51 configuration
296    # example for running on c17-c20 using arrayd
297    
298    cd MITgcm/verification/global_ocean.cs32x15/code
299    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301    \cp SIZE.h_500 SIZE.h
302    \cp packages.conf_hr packages.conf
303    
304    cd ../build
305    \rm *
306    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307    make depend
308    make -j
309    
310    cd ..
311    mkdir run
312    cd run
313    \rm *
314    \cp ../input/* .
315    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316    ln -sf ../../../../run_template/* .
317    \rm pickup*
318    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320    \cp ../build/mitgcmuv .
321    job_c19_500cpu < /dev/null >&! output.run &
322    
323    
324    ##########################################################################
325    ##########################################################################
326    # 510*510*6*50, 216-cpu cube sphere on cosmos
327    
328    cd MITgcm/verification/global_ocean.cs32x15/code
329    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
331    \cp SIZE.h_216 SIZE.h
332    \cp packages.conf_hr packages.conf
333    
334    module unload latest_intel80
335    module unload mpich-gm-intel80
336    module load latest_intel81
337    module load mpich-gm-intel81
338    
339    cd ../build
340    \rm *
341    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
342    make depend
343    make -j
344    
345    cd ..
346    mkdir run
347    cd run
348    \rm *
349    \cp ../input/* .
350    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
351    ln -sf ../../../../run_template/* .
352    \rm pickup*
353    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
354    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
355    \cp ../build/mitgcmuv .
356    bsub < job_cosmos
357    
358    
359  ##########################################################################  ##########################################################################
# Line 262  cd run Line 435  cd run
435  \cp ../input/* .  \cp ../input/* .
436  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
437  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
   
   
   
   
   
   
 #!/bin/csh  
 \cp data.pkg_hr data.pkg  
 \cp data.seaice_hr data.seaice  
 \cp data.exf_clim_hr data.exf_clim  
   
 \cp data_hr92 data  
 ./modpickup  
 \cp data.exf_hr92 data.exf  
 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv  
 mkdir out.1992  
 \mv STDOUT.0000 *.data pickup*.meta out.1992  
 \cp data* out.1992  
 \rm STD* *.meta  
   
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