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revision 1.55 by dimitri, Mon Feb 21 19:15:01 2005 UTC revision 1.70 by dimitri, Thu Oct 12 05:45:52 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 39  cvs co MITgcm_contrib/high_res_cube/inpu
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 61  subplot(224), mypcolor(vice(:,:,6)'); co Line 88  subplot(224), mypcolor(vice(:,:,6)'); co
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
105    make depend
106    make -j
107    
108    cd ..
109    mkdir run
110    cd run
111    \rm *
112    \cp ../input/* .
113    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
114    ln -sf ../../../../run_template/* .
115    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
116    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
117    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
118    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
119    \cp ../build/mitgcmuv .
120    qsub job_altix
121    
122    
123    ##########################################################################
124    ##########################################################################
125  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
126    
127  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 75  cd .. Line 136  cd ..
136  mkdir run  mkdir run
137  cd run  cd run
138  \rm *  \rm *
139    \cp ../../tutorial_held_suarez_cs/input/grid* .
140  \cp ../input/* .  \cp ../input/* .
141  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
142  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 82  cd run Line 144  cd run
144    
145  ##########################################################################  ##########################################################################
146  ##########################################################################  ##########################################################################
147  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
148    
149  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
150  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 99  cd .. Line 161  cd ..
161  mkdir run  mkdir run
162  cd run  cd run
163  \rm *  \rm *
164    \cp ../../tutorial_held_suarez_cs/input/grid* .
165  \cp ../input/* .  \cp ../input/* .
166  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
167  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 195  qsub job_altix92_54t
195    
196  ##########################################################################  ##########################################################################
197  ##########################################################################  ##########################################################################
198  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
199  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
200    
201  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
202  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
203  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
204  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
205  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
206    
207  cd ../build  cd ../build
# Line 156  cd run Line 218  cd run
218  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
219  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
220  \rm pickup*  \rm pickup*
221  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
222  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
223  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
224  qsub job_altix92  qsub job_altix150
225    
226    
227    ##########################################################################
228    ##########################################################################
229    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
230    # uses s1500t_17x51 configuration
231    # example for running on c17-c20 using arrayd
232    
233    cd MITgcm/verification/global_ocean.cs32x15/code
234    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
236    \cp SIZE.h_375 SIZE.h
237    \cp packages.conf_hr packages.conf
238    
239    cd ../build
240    \rm *
241    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
242    make depend
243    make -j
244    
245    cd ..
246    mkdir run
247    cd run
248    \rm *
249    \cp ../input/* .
250    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251    ln -sf ../../../../run_template/* .
252    \rm pickup*
253    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
254    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
255    \cp ../build/mitgcmuv .
256    job_c20_375cpu < /dev/null >&! output.run &
257    
258    
259    ##########################################################################
260    ##########################################################################
261    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
262    # uses s1500t_17x51 configuration
263    # example for running on c17-c20 using arrayd
264    
265    cd MITgcm/verification/global_ocean.cs32x15/code
266    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
267    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
268    \cp SIZE.h_375 SIZE.h
269    \cp packages.conf_hr packages.conf
270    
271    cd ../build
272    \rm *
273    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
274    make depend
275    make -j
276    
277    cd ..
278    mkdir run
279    cd run
280    \rm *
281    \cp ../input/* .
282    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
283    ln -sf ../../../../run_template/* .
284    \rm pickup*
285    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
286    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
287    \cp ../build/mitgcmuv .
288    job_c20_375cpu < /dev/null >&! output.run &
289    
290    
291    ##########################################################################
292    ##########################################################################
293    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
294    # uses s1500t_17x51 configuration
295    # example for running on c17-c20 using arrayd
296    
297    cd MITgcm/verification/global_ocean.cs32x15/code
298    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
299    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
300    \cp SIZE.h_500 SIZE.h
301    \cp packages.conf_hr packages.conf
302    
303    cd ../build
304    \rm *
305    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
306    make depend
307    make -j
308    
309    cd ..
310    mkdir run
311    cd run
312    \rm *
313    \cp ../input/* .
314    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
315    ln -sf ../../../../run_template/* .
316    \rm pickup*
317    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
318    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
319    \cp ../build/mitgcmuv .
320    job_c19_500cpu < /dev/null >&! output.run &
321    
322    
323    ##########################################################################
324    ##########################################################################
325    # 510*510*6*50, 216-cpu cube sphere on cosmos
326    
327    cd MITgcm/verification/global_ocean.cs32x15/code
328    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
329    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
330    \cp SIZE.h_216 SIZE.h
331    \cp packages.conf_hr packages.conf
332    
333    module unload latest_intel80
334    module unload mpich-gm-intel80
335    module load latest_intel81
336    module load mpich-gm-intel81
337    
338    cd ../build
339    \rm *
340    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
341    make depend
342    make -j
343    
344    cd ..
345    mkdir run
346    cd run
347    \rm *
348    \cp ../input/* .
349    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
350    ln -sf ../../../../run_template/* .
351    \rm pickup*
352    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
353    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
354    \cp ../build/mitgcmuv .
355    bsub < job_cosmos
356    
357    
358  ##########################################################################  ##########################################################################
# Line 262  cd run Line 434  cd run
434  \cp ../input/* .  \cp ../input/* .
435  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
436  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
   
   
   
   
   
   
 #!/bin/csh  
 \cp data.pkg_hr data.pkg  
 \cp data.seaice_hr data.seaice  
 \cp data.exf_clim_hr data.exf_clim  
   
 \cp data_hr92 data  
 ./modpickup  
 \cp data.exf_hr92 data.exf  
 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv  
 mkdir out.1992  
 \mv STDOUT.0000 *.data pickup*.meta out.1992  
 \cp data* out.1992  
 \rm STD* *.meta  
   
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