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revision 1.2 by dimitri, Sun Nov 23 20:11:39 2003 UTC revision 1.56 by dimitri, Mon Feb 21 21:53:46 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last updated: February 17, 2005
3    Code and input used for integrating cube22.
4    
5    
6    ##########################################################################
7    ##########################################################################
8    # getting the code from anonymous CVS server
9    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co MITgcm_contrib/high_res_cube/code-mods  
 cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  
10  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs co -r checkpoint52a_post MITgcm_code  cvs co MITgcm_contrib/high_res_cube/code-mods
12    cvs co MITgcm_contrib/high_res_cube/input
13    cvs co MITgcm_contrib/high_res_cube/results
14    cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
16    cvs co MITgcm/verification/testreport
17    
18    
19    ##########################################################################
20    ##########################################################################
21    # 32*32*6*15, 1-cpu cube sphere
22    
23    cd MITgcm/verification/global_ocean.cs32x15/code
24    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26    cd ../build
27    \rm *
28    ../../../tools/genmake2 -mods=../code
29    make depend
30    make
31    cd ..
32    mkdir run
33    cd run
34    \rm *
35    \cp ../input/* .
36    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37    ../build/mitgcmuv >& output.txt
38    
39    comparison output is in:
40    ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
42    to use matlab to look at the output
43    matlab
44    
45    for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46             'QNETtave','FVtave','FUtave','EmPmRtave'}
47        tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48        cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49    end
50    
51    heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
67  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../code_alt/code.176t_8x4/* .
69  \rm mdsio_readfield.F  cd ../build
70  cd ..  \rm *
71  mkdir build  ../../../tools/genmake2 -mods=../code
 cd build  
 ../code/genmake2 -mods=../code  
72  make depend  make depend
73  make  make
74  cd ..  cd ..
75  mkdir run  mkdir run
76  cd run  cd run
77  cp ../input/* .  \rm *
78  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../input/* .
79  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80  ../build/mitgcmuv >& output  ../build/mitgcmuv >& output.txt
81    
82    
83    ##########################################################################
84    ##########################################################################
85    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
86    
87    cd MITgcm/verification/global_ocean.cs32x15/code
88    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
89    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
90    \cp SIZE.h_mpi SIZE.h
91    
92    cd ../build
93    \rm *
94    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95    make depend
96    make -j
97    
98    cd ..
99    mkdir run
100    cd run
101    \rm *
102    \cp ../input/* .
103    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104    mpirun -np 2 ../build/mitgcmuv
105    
106    
107    ##########################################################################
108    ##########################################################################
109    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
110    # starting with pickup file from end of 1992
111    # requires input files in sudirectories run_template and ncep_rgau
112    
113    cd MITgcm/verification/global_ocean.cs32x15/code
114    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
115    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
116    \cp packages.conf_hr packages.conf
117    
118    cd ../build
119    \rm *
120    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
121    make depend
122    make -j
123    
124    cd ..
125    mkdir run
126    cd run
127    \rm *
128    \cp ../input/* .
129    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
130    qsub job_altix92_54t
131    
132    
133    ##########################################################################
134    ##########################################################################
135    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136    # requires input files in sudirectories run_template and ncep_rgau
137    # these can be obained from lou:/u/menemenl/cube
138    
139    cd MITgcm/verification/global_ocean.cs32x15/code
140    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
141    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
142    \cp SIZE.h_216 SIZE.h
143    \cp packages.conf_hr packages.conf
144    
145    cd ../build
146    \rm *
147    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148    make depend
149    make -j
150    
151    cd ..
152    mkdir run
153    cd run
154    \rm *
155    \cp ../input/* .
156    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157    ln -sf ../../../../run_template/* .
158    \rm pickup*
159    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161    \cp ../build/mitgcmuv .
162    qsub job_altix92
163    
164    
165    ##########################################################################
166    ##########################################################################
167    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
168    # uses s1500t_17x51 configuration
169    # example for running on c17-c20 using arrayd
170    
171    cd MITgcm/verification/global_ocean.cs32x15/code
172    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
173    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
174    \cp SIZE.h_375 SIZE.h
175    \cp packages.conf_hr packages.conf
176    
177    cd ../build
178    \rm *
179    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
180    make depend
181    make -j
182    
183    cd ..
184    mkdir run
185    cd run
186    \rm *
187    \cp ../input/* .
188    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
189    ln -sf ../../../../run_template/* .
190    \rm pickup*
191    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
192    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
193    \cp ../build/mitgcmuv .
194    job_c17_c20 < /dev/null >&! output.run &
195    
196    
197    
198    
199    
200    
201    
202    
203    
204    
205    
206    
207    
208    
209    
210    
211    
212    
213    
214    
215    
216    
217    
218    
219    ##########################################################################
220    ##########################################################################
221    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
222    # requires input files in sudirectories run_template and ncep_rgau
223    # presently residing under orion:/tmp1/dmenem/cube
224    
225    cd MITgcm/verification/global_ocean.cs32x15/code
226    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
227    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
228    \cp SIZE.h_54 SIZE.h
229    \cp packages.conf_hr packages.conf
230    
231    cd ../build
232    \rm *
233    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
234    make depend
235    make -j
236    
237    cd ..
238    mkdir run
239    cd run
240    \rm *
241    \cp ../input/* .
242    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
243    qsub job_orion
244    
245    
246    ##########################################################################
247    ##########################################################################
248    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
249    # requires input files in sudirectories run_template and ncep_rgau
250    # presently residing under orion:/tmp1/dmenem/cube
251    
252    cd MITgcm/verification/global_ocean.cs32x15/code
253    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
254    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
255    \cp SIZE.h_41 SIZE.h
256    \cp packages.conf_hr packages.conf
257    
258    cd ../build
259    \rm *
260    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
261    make depend
262    make -j
263    
264    cd ..
265    mkdir run
266    cd run
267    \rm *
268    \cp ../input/* .
269    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
270    qsub job_orion41
271    
272    
273    ##########################################################################
274    ##########################################################################
275    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
276    # requires input files in sudirectories run_template and ncep_rgau
277    # presently residing under orion:/tmp1/dmenem/cube
278    
279    cd MITgcm/verification/global_ocean.cs32x15/code
280    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
281    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
282    \cp SIZE.h_50 SIZE.h
283    \cp packages.conf_hr packages.conf
284    
285    cd ../build
286    \rm *
287    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
288    make depend
289    make -j
290    
291    cd ..
292    mkdir run
293    cd run
294    \rm *
295    \cp ../input/* .
296    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
297    qsub job_orion
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