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revision 1.56 by dimitri, Mon Feb 21 21:53:46 2005 UTC revision 1.68 by dimitri, Mon Oct 9 21:56:42 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 39  cvs co MITgcm_contrib/high_res_cube/inpu
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 61  subplot(224), mypcolor(vice(:,:,6)'); co Line 88  subplot(224), mypcolor(vice(:,:,6)'); co
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia\
105    64_ifort+mpi_altix_nas
106    make depend
107    make -j
108    
109    cd ..
110    mkdir run
111    cd run
112    \rm *
113    \cp ../input/* .
114    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115    ln -sf ../../../../run_template/* .
116    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
118    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38
120    pickup_seaice.\
121    0000000216
122    \cp ../build/mitgcmuv .
123    qsub job_altix
124    
125    
126    ##########################################################################
127    ##########################################################################
128  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
129    
130  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 75  cd .. Line 139  cd ..
139  mkdir run  mkdir run
140  cd run  cd run
141  \rm *  \rm *
142    \cp ../../tutorial_held_suarez_cs/input/grid* .
143  \cp ../input/* .  \cp ../input/* .
144  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 164  cd ..
164  mkdir run  mkdir run
165  cd run  cd run
166  \rm *  \rm *
167    \cp ../../tutorial_held_suarez_cs/input/grid* .
168  \cp ../input/* .  \cp ../input/* .
169  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
170  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 198  qsub job_altix92_54t
198    
199  ##########################################################################  ##########################################################################
200  ##########################################################################  ##########################################################################
201  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
202  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
203    
204  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
205  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
208  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
209    
210  cd ../build  cd ../build
# Line 156  cd run Line 221  cd run
221  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
223  \rm pickup*  \rm pickup*
224  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
227  qsub job_altix92  qsub job_altix150
228    
229    
230  ##########################################################################  ##########################################################################
# Line 188  cd run Line 253  cd run
253  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
255  \rm pickup*  \rm pickup*
256  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
259  job_c17_c20 < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
   
   
   
   
   
   
260    
261    
262    ##########################################################################
263    ##########################################################################
264    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
265    # uses s1500t_17x51 configuration
266    # example for running on c17-c20 using arrayd
267    
268    cd MITgcm/verification/global_ocean.cs32x15/code
269    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
270    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
271    \cp SIZE.h_375 SIZE.h
272    \cp packages.conf_hr packages.conf
273    
274    cd ../build
275    \rm *
276    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
277    make depend
278    make -j
279    
280    cd ..
281    mkdir run
282    cd run
283    \rm *
284    \cp ../input/* .
285    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286    ln -sf ../../../../run_template/* .
287    \rm pickup*
288    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290    \cp ../build/mitgcmuv .
291    job_c20_375cpu < /dev/null >&! output.run &
292    
293    
294    ##########################################################################
295    ##########################################################################
296    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
297    # uses s1500t_17x51 configuration
298    # example for running on c17-c20 using arrayd
299    
300    cd MITgcm/verification/global_ocean.cs32x15/code
301    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
302    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
303    \cp SIZE.h_500 SIZE.h
304    \cp packages.conf_hr packages.conf
305    
306    cd ../build
307    \rm *
308    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
309    make depend
310    make -j
311    
312    cd ..
313    mkdir run
314    cd run
315    \rm *
316    \cp ../input/* .
317    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318    ln -sf ../../../../run_template/* .
319    \rm pickup*
320    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322    \cp ../build/mitgcmuv .
323    job_c19_500cpu < /dev/null >&! output.run &
324    
325    
326    ##########################################################################
327    ##########################################################################
328    # 510*510*6*50, 216-cpu cube sphere on cosmos
329    
330    cd MITgcm/verification/global_ocean.cs32x15/code
331    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
333    \cp SIZE.h_216 SIZE.h
334    \cp packages.conf_hr packages.conf
335    
336    module unload latest_intel80
337    module unload mpich-gm-intel80
338    module load latest_intel81
339    module load mpich-gm-intel81
340    
341    cd ../build
342    \rm *
343    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
344    make depend
345    make -j
346    
347    cd ..
348    mkdir run
349    cd run
350    \rm *
351    \cp ../input/* .
352    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353    ln -sf ../../../../run_template/* .
354    \rm pickup*
355    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357    \cp ../build/mitgcmuv .
358    bsub < job_cosmos
359    
360    
361  ##########################################################################  ##########################################################################
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