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revision 1.3 by dimitri, Mon Nov 24 01:04:28 2003 UTC revision 1.57 by dimitri, Tue Feb 22 01:20:54 2005 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  daInstructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: November 21, 2003.  Date last updated: February 17, 2005
3    Code and input used for integrating cube22.
4    
5  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
6  cvs login ( CVS password: cvsanon )  ##########################################################################
7    ##########################################################################
8    # getting the code from anonymous CVS server
9    
10  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
11  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
 cvs co MITgcm_contrib/high_res_cube/matlab-grid-converter  
12  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14    cvs co MITgcm_code
15    cvs co MITgcm/verification/global_ocean.cs32x15
16    cvs co MITgcm/verification/testreport
17    
 cvs co -r checkpoint52a_post MITgcm_code  
 cvs co -r checkpoint52a_post MITgcm/verification/global_ocean.cs32x15  
18    
19  cd MITgcm/verification/global_ocean.cs32x15/code  ##########################################################################
20  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  ##########################################################################
21  cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  # 32*32*6*15, 1-cpu cube sphere
 \rm mdsio_readfield.F  
22    
23  cd ..  cd MITgcm/verification/global_ocean.cs32x15/code
24  mkdir build  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
25  cd build  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
26  ../code/genmake2 -mods=../code  cd ../build
27    \rm *
28    ../../../tools/genmake2 -mods=../code
29  make depend  make depend
30  make  make
   
31  cd ..  cd ..
32  mkdir run  mkdir run
33  cd run  cd run
34  cp ../input/* .  \rm *
35  cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../input/* .
36  cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
37  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
38    
39  comparison output is in:  comparison output is in:
40  ../../../../MITgcm_contrib/high_res_cube/results/output.txt  ../../../../MITgcm_contrib/high_res_cube/results/output.txt
41    
   
42  to use matlab to look at the output  to use matlab to look at the output
43  matlab  matlab
44  eta=permute(readbin('Eta.0000072020.data',[32,6,32]),[1 3 2]);  
45  cx=[-1 1]; clf  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
46  subplot(3,4, 9);imagesc(flipud(eta(:,:,1)'));caxis(cx);colorbar           'QNETtave','FVtave','FUtave','EmPmRtave'}
47  subplot(3,4,10);imagesc(flipud(eta(:,:,2)'));caxis(cx);colorbar      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
48  subplot(3,4, 6);imagesc(flipud(eta(:,:,3)'));caxis(cx);colorbar      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
49  subplot(3,4, 7);imagesc(flipud(eta(:,:,4)'));caxis(cx);colorbar  end
50  subplot(3,4, 3);imagesc(flipud(eta(:,:,5)'));caxis(cx);colorbar  
51  subplot(3,4, 4);imagesc(flipud(eta(:,:,6)'));caxis(cx);colorbar  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
52    mask=0*heff; mask(find(heff>.001))=1;
53    uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54    vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
55    clf
56    subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
57    subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
58    subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
59    subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
60    
61    
62    ##########################################################################
63    ##########################################################################
64    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
65    
66    cd MITgcm/verification/global_ocean.cs32x15/code
67    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
68    \cp ../code_alt/code.176t_8x4/* .
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code
72    make depend
73    make
74    cd ..
75    mkdir run
76    cd run
77    \rm *
78    \cp ../input/* .
79    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
80    ../build/mitgcmuv >& output.txt
81    
82    
83    ##########################################################################
84    ##########################################################################
85    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
86    
87    cd MITgcm/verification/global_ocean.cs32x15/code
88    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
89    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
90    \cp SIZE.h_mpi SIZE.h
91    
92    cd ../build
93    \rm *
94    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
95    make depend
96    make -j
97    
98    cd ..
99    mkdir run
100    cd run
101    \rm *
102    \cp ../input/* .
103    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104    mpirun -np 2 ../build/mitgcmuv
105    
106    
107    ##########################################################################
108    ##########################################################################
109    # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
110    # starting with pickup file from end of 1992
111    # requires input files in sudirectories run_template and ncep_rgau
112    
113    cd MITgcm/verification/global_ocean.cs32x15/code
114    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
115    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
116    \cp packages.conf_hr packages.conf
117    
118    cd ../build
119    \rm *
120    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
121    make depend
122    make -j
123    
124    cd ..
125    mkdir run
126    cd run
127    \rm *
128    \cp ../input/* .
129    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
130    qsub job_altix92_54t
131    
132    
133    ##########################################################################
134    ##########################################################################
135    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
136    # requires input files in sudirectories run_template and ncep_rgau
137    # these can be obained from lou:/u/menemenl/cube
138    
139    cd MITgcm/verification/global_ocean.cs32x15/code
140    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
141    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
142    \cp SIZE.h_216 SIZE.h
143    \cp packages.conf_hr packages.conf
144    
145    cd ../build
146    \rm *
147    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
148    make depend
149    make -j
150    
151    cd ..
152    mkdir run
153    cd run
154    \rm *
155    \cp ../input/* .
156    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157    ln -sf ../../../../run_template/* .
158    \rm pickup*
159    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
160    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
161    \cp ../build/mitgcmuv .
162    qsub job_altix
163    
164    
165    ##########################################################################
166    ##########################################################################
167    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
168    # uses s1500t_17x51 configuration
169    # example for running on c17-c20 using arrayd
170    
171    cd MITgcm/verification/global_ocean.cs32x15/code
172    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
173    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
174    \cp SIZE.h_375 SIZE.h
175    \cp packages.conf_hr packages.conf
176    
177    cd ../build
178    \rm *
179    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
180    make depend
181    make -j
182    
183    cd ..
184    mkdir run
185    cd run
186    \rm *
187    \cp ../input/* .
188    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
189    ln -sf ../../../../run_template/* .
190    \rm pickup*
191    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
192    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
193    \cp ../build/mitgcmuv .
194    job_c20_375cpu < /dev/null >&! output.run &
195    
196    
197    ##########################################################################
198    ##########################################################################
199    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
200    # uses s1500t_17x51 configuration
201    # example for running on c17-c20 using arrayd
202    
203    cd MITgcm/verification/global_ocean.cs32x15/code
204    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
205    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
206    \cp SIZE.h_500 SIZE.h
207    \cp packages.conf_hr packages.conf
208    
209    cd ../build
210    \rm *
211    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
212    make depend
213    make -j
214    
215    cd ..
216    mkdir run
217    cd run
218    \rm *
219    \cp ../input/* .
220    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
221    ln -sf ../../../../run_template/* .
222    \rm pickup*
223    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data
224    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data
225    \cp ../build/mitgcmuv .
226    job_c19_500cpu < /dev/null >&! output.run &
227    
228    
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240    
241    
242    
243    
244    
245    
246    
247    
248    
249    
250    
251    ##########################################################################
252    ##########################################################################
253    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
254    # requires input files in sudirectories run_template and ncep_rgau
255    # presently residing under orion:/tmp1/dmenem/cube
256    
257    cd MITgcm/verification/global_ocean.cs32x15/code
258    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
259    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
260    \cp SIZE.h_54 SIZE.h
261    \cp packages.conf_hr packages.conf
262    
263    cd ../build
264    \rm *
265    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
266    make depend
267    make -j
268    
269    cd ..
270    mkdir run
271    cd run
272    \rm *
273    \cp ../input/* .
274    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
275    qsub job_orion
276    
277    
278    ##########################################################################
279    ##########################################################################
280    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
281    # requires input files in sudirectories run_template and ncep_rgau
282    # presently residing under orion:/tmp1/dmenem/cube
283    
284    cd MITgcm/verification/global_ocean.cs32x15/code
285    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
286    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
287    \cp SIZE.h_41 SIZE.h
288    \cp packages.conf_hr packages.conf
289    
290    cd ../build
291    \rm *
292    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
293    make depend
294    make -j
295    
296    cd ..
297    mkdir run
298    cd run
299    \rm *
300    \cp ../input/* .
301    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
302    qsub job_orion41
303    
304    
305    ##########################################################################
306    ##########################################################################
307    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
308    # requires input files in sudirectories run_template and ncep_rgau
309    # presently residing under orion:/tmp1/dmenem/cube
310    
311    cd MITgcm/verification/global_ocean.cs32x15/code
312    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
313    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
314    \cp SIZE.h_50 SIZE.h
315    \cp packages.conf_hr packages.conf
316    
317    cd ../build
318    \rm *
319    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
320    make depend
321    make -j
322    
323    cd ..
324    mkdir run
325    cd run
326    \rm *
327    \cp ../input/* .
328    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
329    qsub job_orion
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