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revision 1.57 by dimitri, Tue Feb 22 01:20:54 2005 UTC revision 1.71 by dimitri, Thu Oct 12 06:09:38 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
37  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 39  cvs co MITgcm_contrib/high_res_cube/inpu
39  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
40  cvs co MITgcm_code  cvs co MITgcm_code
41  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
42  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 58  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \rm *  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 61  subplot(224), mypcolor(vice(:,:,6)'); co Line 88  subplot(224), mypcolor(vice(:,:,6)'); co
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93    # these can be obained from lou:/u/menemenl/cube
94    
95    cd MITgcm/verification/global_ocean.cs32x15/code
96    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98    \cp SIZE.h_216 SIZE.h
99    \cp packages.conf_hr packages.conf
100    
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
104    make depend
105    make -j
106    
107    cd ..
108    mkdir run
109    cd run
110    \rm *
111    \cp ../input/* .
112    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
113    ln -sf ../../../../run_template/* .
114    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
115    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
116    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
117    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
118    \cp ../build/mitgcmuv .
119    qsub job_altix
120    
121    
122    ##########################################################################
123    ##########################################################################
124  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
125    
126  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 75  cd .. Line 135  cd ..
135  mkdir run  mkdir run
136  cd run  cd run
137  \rm *  \rm *
138    \cp ../../tutorial_held_suarez_cs/input/grid* .
139  \cp ../input/* .  \cp ../input/* .
140  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
141  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 160  cd ..
160  mkdir run  mkdir run
161  cd run  cd run
162  \rm *  \rm *
163    \cp ../../tutorial_held_suarez_cs/input/grid* .
164  \cp ../input/* .  \cp ../input/* .
165  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
166  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 194  qsub job_altix92_54t
194    
195  ##########################################################################  ##########################################################################
196  ##########################################################################  ##########################################################################
197  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
198  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
199    
200  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
201  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
202  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
203  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
204  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
205    
206  cd ../build  cd ../build
# Line 156  cd run Line 217  cd run
217  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
218  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
219  \rm pickup*  \rm pickup*
220  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
221  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
222  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
223  qsub job_altix  qsub job_altix150
224    
225    
226  ##########################################################################  ##########################################################################
# Line 188  cd run Line 249  cd run
249  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
250  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
251  \rm pickup*  \rm pickup*
252  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
253  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
254  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
255  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
256    
257    
258  ##########################################################################  ##########################################################################
259  ##########################################################################  ##########################################################################
260  # 510*510*6*50, 1500-tile, 500-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
261  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
262  # example for running on c17-c20 using arrayd  # example for running on c17-c20 using arrayd
263    
264  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
265  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
266  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
267  \cp SIZE.h_500 SIZE.h  \cp SIZE.h_375 SIZE.h
268  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
269    
270  cd ../build  cd ../build
# Line 220  cd run Line 281  cd run
281  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
282  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
283  \rm pickup*  \rm pickup*
284  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
285  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
286  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
287  job_c19_500cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
   
   
   
   
   
   
   
   
   
   
   
288    
289    
290    ##########################################################################
291    ##########################################################################
292    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
293    # uses s1500t_17x51 configuration
294    # example for running on c17-c20 using arrayd
295    
296    cd MITgcm/verification/global_ocean.cs32x15/code
297    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
298    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
299    \cp SIZE.h_500 SIZE.h
300    \cp packages.conf_hr packages.conf
301    
302    cd ../build
303    \rm *
304    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
305    make depend
306    make -j
307    
308    cd ..
309    mkdir run
310    cd run
311    \rm *
312    \cp ../input/* .
313    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
314    ln -sf ../../../../run_template/* .
315    \rm pickup*
316    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
317    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
318    \cp ../build/mitgcmuv .
319    job_c19_500cpu < /dev/null >&! output.run &
320    
321    
322    ##########################################################################
323    ##########################################################################
324    # 510*510*6*50, 216-cpu cube sphere on cosmos
325    
326    cd MITgcm/verification/global_ocean.cs32x15/code
327    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
328    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
329    \cp SIZE.h_216 SIZE.h
330    \cp packages.conf_hr packages.conf
331    
332    module unload latest_intel80
333    module unload mpich-gm-intel80
334    module load latest_intel81
335    module load mpich-gm-intel81
336    
337    cd ../build
338    \rm *
339    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
340    make depend
341    make -j
342    
343    cd ..
344    mkdir run
345    cd run
346    \rm *
347    \cp ../input/* .
348    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
349    ln -sf ../../../../run_template/* .
350    \rm pickup*
351    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
352    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
353    \cp ../build/mitgcmuv .
354    bsub < job_cosmos
355    
356    
357  ##########################################################################  ##########################################################################
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