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revision 1.60 by dimitri, Thu Sep 15 22:00:15 2005 UTC revision 1.75 by dimitri, Fri Nov 3 23:17:42 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  =================
4    UPDATES
5    
6    November 3, 2006: 216-CPU code for cube43
7    Martin's growth.F routine and Patrick's pkg/seaice diagnostics
8    
9    October 15, 2006: 216-CPU code for cube40
10    
11    September 28, 2006: 216-CPU code for cube38
12    
13    September 4, 2006
14    Modified 32*32*6*15 experiments to use grid_cs32.* files from
15     verification/tutorial_held_suarez_cs/input instead of
16     tile* files from verification/global_ocean.cs32x15/input
17    
18    August 8, 2006: 216-CPU code and input used for cube37
19    using "June 10, 2006" MITgcm code.
20    
21    for online T/S profile diagnostics all that is needed is
22      profiles_init_fixed
23      profiles_inloop
24    see pkg/ecco/ecco_cost_init_fixed.F
25        pkg/ecco/cost_averagesfields.F
26    
27    
28  ##########################################################################  ##########################################################################
29  ##########################################################################  ##########################################################################
30  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
31    #
32    
33      bash or sh shell:
34        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
35        $ cvs login
36          ( enter the CVS password: "cvsanon" )
37    
38      tcsh or csh shell:
39        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
40        $ cvs login
41          ( enter the CVS password: "cvsanon" )
42    
43  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
44  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 46  cvs co MITgcm_contrib/high_res_cube/inpu
46  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
47  cvs co MITgcm_code  cvs co MITgcm_code
48  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
49  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
50    
51    
52    ##########################################################################
53    ##########################################################################
54    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
55    # requires input files in sudirectories run_template and ncep_rgau
56    # these can be obained from lou:/u/menemenl/cube
57    
58    cd MITgcm/verification/global_ocean.cs32x15/code
59    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
60    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
61    \cp SIZE.h_216 SIZE.h
62    \cp packages.conf_hr packages.conf
63    
64    cd ../build
65    \rm *
66    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
67    make depend
68    make -j
69    
70    cd ..
71    mkdir run
72    cd run
73    \rm *
74    \cp ../input/* .
75    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
76    ln -sf ../../../../run_template/* .
77    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
78    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
79    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
80    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
81    \cp ../build/mitgcmuv .
82    qsub job_altix
83    
84    
85  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 98  cd ..
98  mkdir run  mkdir run
99  cd run  cd run
100  \rm *  \rm *
101    \cp ../../tutorial_held_suarez_cs/input/grid* .
102  \cp ../input/* .  \cp ../input/* .
103  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 75  cd .. Line 142  cd ..
142  mkdir run  mkdir run
143  cd run  cd run
144  \rm *  \rm *
145    \cp ../../tutorial_held_suarez_cs/input/grid* .
146  \cp ../input/* .  \cp ../input/* .
147  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
148  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 167  cd ..
167  mkdir run  mkdir run
168  cd run  cd run
169  \rm *  \rm *
170    \cp ../../tutorial_held_suarez_cs/input/grid* .
171  \cp ../input/* .  \cp ../input/* .
172  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 201  qsub job_altix92_54t
201    
202  ##########################################################################  ##########################################################################
203  ##########################################################################  ##########################################################################
204  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
205  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
206    
207  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
208  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
209  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
210  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
211  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
212    
213  cd ../build  cd ../build
# Line 156  cd run Line 224  cd run
224  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
225  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
226  \rm pickup*  \rm pickup*
227  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
228  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
229  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
230  qsub job_altix  qsub job_altix150
231    
232    
233  ##########################################################################  ##########################################################################
234  ##########################################################################  ##########################################################################
235  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
236  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
237    # example for running on c17-c20 using arrayd
238    
239  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
240  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
241  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
242  \cp SIZE.h_150 SIZE.h  \cp SIZE.h_375 SIZE.h
243  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
244    
245  cd ../build  cd ../build
# Line 186  cd run Line 256  cd run
256  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
257  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
258  \rm pickup*  \rm pickup*
259  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
260  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
261  \cp ../build/mitgcmuv mitgcmuv150  \cp ../build/mitgcmuv .
262  qsub job_altix150  job_c20_375cpu < /dev/null >&! output.run &
   
   
   
   
   
   
   
   
   
   
   
   
   
263    
264    
265  ##########################################################################  ##########################################################################
# Line 231  cd run Line 288  cd run
288  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
289  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
290  \rm pickup*  \rm pickup*
291  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
292  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
293  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
294  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
295    
# Line 263  cd run Line 320  cd run
320  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
321  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
322  \rm pickup*  \rm pickup*
323  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
324  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
325  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
326  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
327    
328    
   
   
   
329  ##########################################################################  ##########################################################################
330  ##########################################################################  ##########################################################################
331  # 510*510*6*50, 216-cpu cube sphere on cosmos  # 510*510*6*50, 216-cpu cube sphere on cosmos
# Line 301  cd run Line 355  cd run
355  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
356  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
357  \rm pickup*  \rm pickup*
358  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
359  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
360  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
361  bsub < job_cosmos  bsub < job_cosmos
362    
363    
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
364  ##########################################################################  ##########################################################################
365  ##########################################################################  ##########################################################################
366  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
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