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revision 1.56 by dimitri, Mon Feb 21 21:53:46 2005 UTC revision 1.61 by dimitri, Wed Dec 14 05:12:19 2005 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  Date last updated: December 13, 2005
3  Code and input used for integrating cube22.  216-CPU code and input used for integrating cube27.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 13  cvs co MITgcm_contrib/high_res_cube/inpu
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_code  cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
 cvs co MITgcm/verification/testreport  
16    
17    
18  ##########################################################################  ##########################################################################
# Line 156  cd run Line 155  cd run
155  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
157  \rm pickup*  \rm pickup*
158  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
159  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
160  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
161  qsub job_altix92  qsub job_altix
162    
163    
164    ##########################################################################
165    ##########################################################################
166    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
167    # uses s1500t_17x51 configuration
168    
169    cd MITgcm/verification/global_ocean.cs32x15/code
170    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
171    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
172    \cp SIZE.h_150 SIZE.h
173    \cp packages.conf_hr packages.conf
174    
175    cd ../build
176    \rm *
177    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
178    make depend
179    make -j
180    
181    cd ..
182    mkdir run
183    cd run
184    \rm *
185    \cp ../input/* .
186    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
187    ln -sf ../../../../run_template/* .
188    \rm pickup*
189    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
190    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
191    \cp ../build/mitgcmuv mitgcmuv150
192    qsub job_altix150
193    
194    
195    
196    
197    ##########################################################################
198    ##########################################################################
199    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
200    # uses s1500t_17x51 configuration
201    # example for running on c17-c20 using arrayd
202    
203    cd MITgcm/verification/global_ocean.cs32x15/code
204    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
205    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
206    \cp SIZE.h_375 SIZE.h
207    \cp packages.conf_hr packages.conf
208    
209    cd ../build
210    \rm *
211    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
212    make depend
213    make -j
214    
215    cd ..
216    mkdir run
217    cd run
218    \rm *
219    \cp ../input/* .
220    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
221    ln -sf ../../../../run_template/* .
222    \rm pickup*
223    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
224    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
225    \cp ../build/mitgcmuv .
226    job_c20_375cpu < /dev/null >&! output.run &
227    
228    
229    
230    
231    
232    
233    
234    
235    
236    
237    
238    
239  ##########################################################################  ##########################################################################
# Line 188  cd run Line 262  cd run
262  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
263  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
264  \rm pickup*  \rm pickup*
265  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
266  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
267  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
268  job_c17_c20 < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
269    
270    
271    ##########################################################################
272    ##########################################################################
273    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
274    # uses s1500t_17x51 configuration
275    # example for running on c17-c20 using arrayd
276    
277    cd MITgcm/verification/global_ocean.cs32x15/code
278    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
279    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
280    \cp SIZE.h_500 SIZE.h
281    \cp packages.conf_hr packages.conf
282    
283    cd ../build
284    \rm *
285    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
286    make depend
287    make -j
288    
289    cd ..
290    mkdir run
291    cd run
292    \rm *
293    \cp ../input/* .
294    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
295    ln -sf ../../../../run_template/* .
296    \rm pickup*
297    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
298    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
299    \cp ../build/mitgcmuv .
300    job_c19_500cpu < /dev/null >&! output.run &
301    
302    
303    
304    
305    
306    ##########################################################################
307    ##########################################################################
308    # 510*510*6*50, 216-cpu cube sphere on cosmos
309    
310    cd MITgcm/verification/global_ocean.cs32x15/code
311    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
312    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
313    \cp SIZE.h_216 SIZE.h
314    \cp packages.conf_hr packages.conf
315    
316    module unload latest_intel80
317    module unload mpich-gm-intel80
318    module load latest_intel81
319    module load mpich-gm-intel81
320    
321    cd ../build
322    \rm *
323    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
324    make depend
325    make -j
326    
327    cd ..
328    mkdir run
329    cd run
330    \rm *
331    \cp ../input/* .
332    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
333    ln -sf ../../../../run_template/* .
334    \rm pickup*
335    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
336    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
337    \cp ../build/mitgcmuv .
338    bsub < job_cosmos
339    
340    
341    
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