/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.49 by dimitri, Tue Jan 4 04:19:14 2005 UTC revision 1.63 by dimitri, Sat Jun 10 15:47:23 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: July 9, 2004.  Date last updated: June 10, 2006
3  Code and input used for integrating cube9.  216-CPU code and input used for integrating cube37.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 13  cvs co MITgcm_contrib/high_res_cube/inpu
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_code  cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
 cvs co MITgcm/verification/testreport  
16    
17    
18  ##########################################################################  ##########################################################################
# Line 42  comparison output is in: Line 41  comparison output is in:
41  to use matlab to look at the output  to use matlab to look at the output
42  matlab  matlab
43    
44  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
45             'QNETtave','FVtave','FUtave','EmPmRtave'}
46      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
47      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
48  end  end
49    
50  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
51  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
52  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
53  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
54  clf  clf
55  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
56  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
57  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
58  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
59    
60    
61  ##########################################################################  ##########################################################################
# Line 78  cd run Line 78  cd run
78  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
80    
 comparison output is in:  
 ../../../../MITgcm_contrib/high_res_cube/results/output.txt  
   
 to use matlab to look at the output  
 matlab  
   
 for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
     tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);  
     cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause  
 end  
   
 heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  
 mask=0*heff; mask(find(heff>.001))=1;  
 uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  
 clf  
 subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  
 subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  
 subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  
 subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  
   
81    
82  ##########################################################################  ##########################################################################
83  ##########################################################################  ##########################################################################
84  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
85    
86  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
87  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 111  cd MITgcm/verification/global_ocean.cs32 Line 90  cd MITgcm/verification/global_ocean.cs32
90    
91  cd ../build  cd ../build
92  \rm *  \rm *
93  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
94  make depend  make depend
95  make -j  make -j
96    
# Line 152  qsub job_altix92_54t Line 131  qsub job_altix92_54t
131    
132  ##########################################################################  ##########################################################################
133  ##########################################################################  ##########################################################################
134  # 510*510*6*50, 216-cpu cube sphere on altix with ifort  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
135  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
136  # these can be obained from lou:/u/menemenl/cube  # these can be obained from lou:/u/menemenl/cube
137    
# Line 166  cd ../build Line 145  cd ../build
145  \rm *  \rm *
146  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
147  make depend  make depend
148  make -j 4  make -j
149    
150  cd ..  cd ..
151  mkdir run  mkdir run
# Line 175  cd run Line 154  cd run
154  \cp ../input/* .  \cp ../input/* .
155  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
157  ln -sf pickup.0000000216.cube20 pickup.0000000216.data  \rm pickup* data.pkg data.seaice data.exf_clim data.exf data
158  ln -sf pickup_seaice.0000000216.cube20 pickup_seaice.0000000216.data  \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
159    ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
160    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
161  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
162  qsub job_altix92  qsub job_altix
163    
164    
165    ##########################################################################
166    ##########################################################################
167    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
168    # uses s1500t_17x51 configuration
169    
170    cd MITgcm/verification/global_ocean.cs32x15/code
171    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
172    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
173    \cp SIZE.h_150 SIZE.h
174    \cp packages.conf_hr packages.conf
175    
176    cd ../build
177    \rm *
178    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
179    make depend
180    make -j
181    
182    cd ..
183    mkdir run
184    cd run
185    \rm *
186    \cp ../input/* .
187    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
188    ln -sf ../../../../run_template/* .
189    \rm pickup*
190    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
191    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
192    \cp ../build/mitgcmuv mitgcmuv150
193    qsub job_altix150
194    
195    
196    
197    
198    ##########################################################################
199    ##########################################################################
200    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
201    # uses s1500t_17x51 configuration
202    # example for running on c17-c20 using arrayd
203    
204    cd MITgcm/verification/global_ocean.cs32x15/code
205    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207    \cp SIZE.h_375 SIZE.h
208    \cp packages.conf_hr packages.conf
209    
210    cd ../build
211    \rm *
212    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213    make depend
214    make -j
215    
216    cd ..
217    mkdir run
218    cd run
219    \rm *
220    \cp ../input/* .
221    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222    ln -sf ../../../../run_template/* .
223    \rm pickup*
224    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226    \cp ../build/mitgcmuv .
227    job_c20_375cpu < /dev/null >&! output.run &
228    
229    
230    
231    
232    
233    
234    
235    
236    
237    
238    
239    
240    ##########################################################################
241    ##########################################################################
242    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
243    # uses s1500t_17x51 configuration
244    # example for running on c17-c20 using arrayd
245    
246    cd MITgcm/verification/global_ocean.cs32x15/code
247    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249    \cp SIZE.h_375 SIZE.h
250    \cp packages.conf_hr packages.conf
251    
252    cd ../build
253    \rm *
254    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
255    make depend
256    make -j
257    
258    cd ..
259    mkdir run
260    cd run
261    \rm *
262    \cp ../input/* .
263    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264    ln -sf ../../../../run_template/* .
265    \rm pickup*
266    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
267    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
268    \cp ../build/mitgcmuv .
269    job_c20_375cpu < /dev/null >&! output.run &
270    
271    
272    ##########################################################################
273    ##########################################################################
274    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
275    # uses s1500t_17x51 configuration
276    # example for running on c17-c20 using arrayd
277    
278    cd MITgcm/verification/global_ocean.cs32x15/code
279    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
280    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
281    \cp SIZE.h_500 SIZE.h
282    \cp packages.conf_hr packages.conf
283    
284    cd ../build
285    \rm *
286    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
287    make depend
288    make -j
289    
290    cd ..
291    mkdir run
292    cd run
293    \rm *
294    \cp ../input/* .
295    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
296    ln -sf ../../../../run_template/* .
297    \rm pickup*
298    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
299    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
300    \cp ../build/mitgcmuv .
301    job_c19_500cpu < /dev/null >&! output.run &
302    
303    
304    
305    
306    
307    ##########################################################################
308    ##########################################################################
309    # 510*510*6*50, 216-cpu cube sphere on cosmos
310    
311    cd MITgcm/verification/global_ocean.cs32x15/code
312    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
313    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
314    \cp SIZE.h_216 SIZE.h
315    \cp packages.conf_hr packages.conf
316    
317    module unload latest_intel80
318    module unload mpich-gm-intel80
319    module load latest_intel81
320    module load mpich-gm-intel81
321    
322    cd ../build
323    \rm *
324    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
325    make depend
326    make -j
327    
328    cd ..
329    mkdir run
330    cd run
331    \rm *
332    \cp ../input/* .
333    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334    ln -sf ../../../../run_template/* .
335    \rm pickup*
336    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338    \cp ../build/mitgcmuv .
339    bsub < job_cosmos
340    
341    
342    
343    
344    
# Line 276  cd run Line 436  cd run
436  \cp ../input/* .  \cp ../input/* .
437  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
438  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
   
   
   
   
   
   
 #!/bin/csh  
 \cp data.pkg_hr data.pkg  
 \cp data.seaice_hr data.seaice  
 \cp data.exf_clim_hr data.exf_clim  
   
 \cp data_hr92 data  
 ./modpickup  
 \cp data.exf_hr92 data.exf  
 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv  
 mkdir out.1992  
 \mv STDOUT.0000 *.data pickup*.meta out.1992  
 \cp data* out.1992  
 \rm STD* *.meta  
   
Legend:
Removed from v.1.49  
changed lines
  Added in v.1.63
  ViewVC Help
Powered by ViewVC 1.1.22