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revision 1.57 by dimitri, Tue Feb 22 01:20:54 2005 UTC revision 1.63 by dimitri, Sat Jun 10 15:47:23 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  Date last updated: June 10, 2006
3  Code and input used for integrating cube22.  216-CPU code and input used for integrating cube37.
4    
5    
6  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 13  cvs co MITgcm_contrib/high_res_cube/inpu
13  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
14  cvs co MITgcm_code  cvs co MITgcm_code
15  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
 cvs co MITgcm/verification/testreport  
16    
17    
18  ##########################################################################  ##########################################################################
# Line 155  cd run Line 154  cd run
154  \cp ../input/* .  \cp ../input/* .
155  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
156  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
157  \rm pickup*  \rm pickup* data.pkg data.seaice data.exf_clim data.exf data
158  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
159  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
160    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
161  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
162  qsub job_altix  qsub job_altix
163    
164    
165  ##########################################################################  ##########################################################################
166  ##########################################################################  ##########################################################################
167    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
168    # uses s1500t_17x51 configuration
169    
170    cd MITgcm/verification/global_ocean.cs32x15/code
171    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
172    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
173    \cp SIZE.h_150 SIZE.h
174    \cp packages.conf_hr packages.conf
175    
176    cd ../build
177    \rm *
178    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
179    make depend
180    make -j
181    
182    cd ..
183    mkdir run
184    cd run
185    \rm *
186    \cp ../input/* .
187    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
188    ln -sf ../../../../run_template/* .
189    \rm pickup*
190    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
191    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
192    \cp ../build/mitgcmuv mitgcmuv150
193    qsub job_altix150
194    
195    
196    
197    
198    ##########################################################################
199    ##########################################################################
200  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
201  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
202  # example for running on c17-c20 using arrayd  # example for running on c17-c20 using arrayd
# Line 188  cd run Line 221  cd run
221  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
223  \rm pickup*  \rm pickup*
224  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226    \cp ../build/mitgcmuv .
227    job_c20_375cpu < /dev/null >&! output.run &
228    
229    
230    
231    
232    
233    
234    
235    
236    
237    
238    
239    
240    ##########################################################################
241    ##########################################################################
242    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
243    # uses s1500t_17x51 configuration
244    # example for running on c17-c20 using arrayd
245    
246    cd MITgcm/verification/global_ocean.cs32x15/code
247    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
248    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
249    \cp SIZE.h_375 SIZE.h
250    \cp packages.conf_hr packages.conf
251    
252    cd ../build
253    \rm *
254    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
255    make depend
256    make -j
257    
258    cd ..
259    mkdir run
260    cd run
261    \rm *
262    \cp ../input/* .
263    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
264    ln -sf ../../../../run_template/* .
265    \rm pickup*
266    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
267    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
268  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
269  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
270    
# Line 220  cd run Line 295  cd run
295  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
296  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
297  \rm pickup*  \rm pickup*
298  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
299  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
300  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
301  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
302    
# Line 229  job_c19_500cpu < /dev/null >&! output.ru Line 304  job_c19_500cpu < /dev/null >&! output.ru
304    
305    
306    
307    ##########################################################################
308    ##########################################################################
309    # 510*510*6*50, 216-cpu cube sphere on cosmos
310    
311    cd MITgcm/verification/global_ocean.cs32x15/code
312    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
313    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
314    \cp SIZE.h_216 SIZE.h
315    \cp packages.conf_hr packages.conf
316    
317    module unload latest_intel80
318    module unload mpich-gm-intel80
319    module load latest_intel81
320    module load mpich-gm-intel81
321    
322    cd ../build
323    \rm *
324    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
325    make depend
326    make -j
327    
328    cd ..
329    mkdir run
330    cd run
331    \rm *
332    \cp ../input/* .
333    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
334    ln -sf ../../../../run_template/* .
335    \rm pickup*
336    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
337    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
338    \cp ../build/mitgcmuv .
339    bsub < job_cosmos
340    
341    
342    
343    
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