/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.63 by dimitri, Sat Jun 10 15:47:23 2006 UTC revision 1.88 by dimitri, Wed Jan 31 01:57:41 2007 UTC
# Line 1  Line 1 
1    
2  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
3  Date last updated: June 10, 2006  
4  216-CPU code and input used for integrating cube37.  Forcing fields and other input files needed for the CS510
5    configuration can be obtained from
6    http://ecco2.org/products/model_setups/cs510.html
7    
8    =================
9    UPDATES
10    
11    January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
12    
13    January 5, 2006: cube50, like cube48 but with snow advection
14    
15    December 30, 2006: updates for cube49, the first
16    "blend" integration.
17    
18    December 11, 2006: preparing for cube47, same as cube43
19    but with Arctic monthly river runoff climatology.
20    
21    December 5, 2006: 216-CPU code for cube46
22    Changed diagnostics to accomodate JMCs latest and some
23    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
24    to speed up code.
25    
26    November 7, 2006: 216-CPU code for cube43
27    Bug fixes in growth.F routine and new set of diagnostics
28    
29    October 15, 2006: 216-CPU code for cube40
30    
31    September 28, 2006: 216-CPU code for cube38
32    
33    September 4, 2006
34    Modified 32*32*6*15 experiments to use grid_cs32.* files from
35     verification/tutorial_held_suarez_cs/input instead of
36     tile* files from verification/global_ocean.cs32x15/input
37    
38    August 8, 2006: 216-CPU code and input used for cube37
39    using "June 10, 2006" MITgcm code.
40    
41    for online T/S profile diagnostics all that is needed is
42      profiles_init_fixed
43      profiles_inloop
44    see pkg/ecco/ecco_cost_init_fixed.F
45        pkg/ecco/cost_averagesfields.F
46    
47    ##########################################################################
48    ##########################################################################
49    # Get forcing files, etc.
50    # Example below is for cube46 on /nobackup2a/menemenl
51    
52    cd /nobackup2a/menemenl
53    mkdir cube47
54    cd cube47
55    ln -sf ../run_template .
56    ln -sf ../ncep_rgau .
57    
58    
59  ##########################################################################  ##########################################################################
60  ##########################################################################  ##########################################################################
61  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
62    
63      bash or sh shell:
64        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
65        $ cvs login
66          ( enter the CVS password: "cvsanon" )
67    
68      tcsh or csh shell:
69        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
70        $ cvs login
71          ( enter the CVS password: "cvsanon" )
72    
73  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
74  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
75  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
76  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
77  cvs co MITgcm_code  cvs co MITgcm_code
78  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
79    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
80    
81    
82    ##########################################################################
83    ##########################################################################
84    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
85    
86    cd MITgcm/verification/global_ocean.cs32x15/code
87    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
88    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
89    \cp SIZE.h_216 SIZE.h
90    \cp packages.conf_hr packages.conf
91    
92    cd ../build
93    \rm *
94    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
95    make depend
96    make -j
97    
98    cd ..
99    mkdir run
100    cd run
101    \rm *
102    \cp ../input/* .
103    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
104    ln -sf ../../../../run_template/* .
105    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
106    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
107    ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
108    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
109    \cp ../build/mitgcmuv .
110    qsub job_altix
111    
112    
113  ##########################################################################  ##########################################################################
# Line 22  cvs co MITgcm/verification/global_ocean. Line 117  cvs co MITgcm/verification/global_ocean.
117  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
118  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
119  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
120    \rm CPP_EEOPTIONS.h
121  cd ../build  cd ../build
122  \rm *  \rm *
123  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
# Line 31  cd .. Line 127  cd ..
127  mkdir run  mkdir run
128  cd run  cd run
129  \rm *  \rm *
130    \cp ../../tutorial_held_suarez_cs/input/grid* .
131  \cp ../input/* .  \cp ../input/* .
132  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
133  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 41  comparison output is in: Line 138  comparison output is in:
138  to use matlab to look at the output  to use matlab to look at the output
139  matlab  matlab
140    
141  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
142           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
143      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
144      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
145  end  end
146    
147  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
148  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
149  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
150  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
151  clf  clf
152  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
153  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 74  cd .. Line 171  cd ..
171  mkdir run  mkdir run
172  cd run  cd run
173  \rm *  \rm *
174    \cp ../../tutorial_held_suarez_cs/input/grid* .
175  \cp ../input/* .  \cp ../input/* .
176  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
177  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 98  cd .. Line 196  cd ..
196  mkdir run  mkdir run
197  cd run  cd run
198  \rm *  \rm *
199    \cp ../../tutorial_held_suarez_cs/input/grid* .
200  \cp ../input/* .  \cp ../input/* .
201  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
202  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 131  qsub job_altix92_54t Line 230  qsub job_altix92_54t
230    
231  ##########################################################################  ##########################################################################
232  ##########################################################################  ##########################################################################
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data  
 \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  
 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
 ##########################################################################  
233  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
234  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
235    
# Line 193  ln -sf  ../../../../run_template/pickup_ Line 259  ln -sf  ../../../../run_template/pickup_
259  qsub job_altix150  qsub job_altix150
260    
261    
   
   
262  ##########################################################################  ##########################################################################
263  ##########################################################################  ##########################################################################
264  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
# Line 227  ln -sf  ../../../../run_template/pickup_ Line 291  ln -sf  ../../../../run_template/pickup_
291  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
292    
293    
   
   
   
   
   
   
   
   
   
   
294  ##########################################################################  ##########################################################################
295  ##########################################################################  ##########################################################################
296  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
# Line 301  ln -sf  ../../../../run_template/pickup_ Line 355  ln -sf  ../../../../run_template/pickup_
355  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
356    
357    
   
   
   
358  ##########################################################################  ##########################################################################
359  ##########################################################################  ##########################################################################
360  # 510*510*6*50, 216-cpu cube sphere on cosmos  # 510*510*6*50, 216-cpu cube sphere on cosmos
# Line 339  ln -sf  ../../../../run_template/pickup_ Line 390  ln -sf  ../../../../run_template/pickup_
390  bsub < job_cosmos  bsub < job_cosmos
391    
392    
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
393  ##########################################################################  ##########################################################################
394  ##########################################################################  ##########################################################################
395  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
Legend:
Removed from v.1.63  
changed lines
  Added in v.1.88
  ViewVC Help
Powered by ViewVC 1.1.22