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revision 1.56 by dimitri, Mon Feb 21 21:53:46 2005 UTC revision 1.64 by dimitri, Tue Aug 8 13:45:43 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  Date last updated: August 8, 2006
3  Code and input used for integrating cube22.  216-CPU code and input used for integrating cube37
4    using "June 10, 2006" MITgcm code.
5    
6    
7  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 14  cvs co MITgcm_contrib/high_res_cube/inpu
14  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
15  cvs co MITgcm_code  cvs co MITgcm_code
16  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
 cvs co MITgcm/verification/testreport  
17    
18    
19  ##########################################################################  ##########################################################################
# Line 155  cd run Line 155  cd run
155  \cp ../input/* .  \cp ../input/* .
156  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
157  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
158    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data
159    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
160    ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216
161    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216
162    \cp ../build/mitgcmuv .
163    qsub job_altix
164    
165    
166    ##########################################################################
167    ##########################################################################
168    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
169    # uses s1500t_17x51 configuration
170    
171    cd MITgcm/verification/global_ocean.cs32x15/code
172    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
173    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
174    \cp SIZE.h_150 SIZE.h
175    \cp packages.conf_hr packages.conf
176    
177    cd ../build
178    \rm *
179    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
180    make depend
181    make -j
182    
183    cd ..
184    mkdir run
185    cd run
186    \rm *
187    \cp ../input/* .
188    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
189    ln -sf ../../../../run_template/* .
190  \rm pickup*  \rm pickup*
191  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
192  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
193    \cp ../build/mitgcmuv mitgcmuv150
194    qsub job_altix150
195    
196    
197    
198    
199    ##########################################################################
200    ##########################################################################
201    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
202    # uses s1500t_17x51 configuration
203    # example for running on c17-c20 using arrayd
204    
205    cd MITgcm/verification/global_ocean.cs32x15/code
206    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
207    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
208    \cp SIZE.h_375 SIZE.h
209    \cp packages.conf_hr packages.conf
210    
211    cd ../build
212    \rm *
213    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
214    make depend
215    make -j
216    
217    cd ..
218    mkdir run
219    cd run
220    \rm *
221    \cp ../input/* .
222    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
223    ln -sf ../../../../run_template/* .
224    \rm pickup*
225    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
226    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
227  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
228  qsub job_altix92  job_c20_375cpu < /dev/null >&! output.run &
229    
230    
231    
232    
233    
234    
235    
236    
237    
238    
239    
240    
241  ##########################################################################  ##########################################################################
# Line 188  cd run Line 264  cd run
264  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
265  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
266  \rm pickup*  \rm pickup*
267  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
268  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
269    \cp ../build/mitgcmuv .
270    job_c20_375cpu < /dev/null >&! output.run &
271    
272    
273    ##########################################################################
274    ##########################################################################
275    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
276    # uses s1500t_17x51 configuration
277    # example for running on c17-c20 using arrayd
278    
279    cd MITgcm/verification/global_ocean.cs32x15/code
280    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
281    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
282    \cp SIZE.h_500 SIZE.h
283    \cp packages.conf_hr packages.conf
284    
285    cd ../build
286    \rm *
287    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
288    make depend
289    make -j
290    
291    cd ..
292    mkdir run
293    cd run
294    \rm *
295    \cp ../input/* .
296    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
297    ln -sf ../../../../run_template/* .
298    \rm pickup*
299    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
300    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
301  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
302  job_c17_c20 < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
303    
304    
305    
306    
307    
308    ##########################################################################
309    ##########################################################################
310    # 510*510*6*50, 216-cpu cube sphere on cosmos
311    
312    cd MITgcm/verification/global_ocean.cs32x15/code
313    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
314    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
315    \cp SIZE.h_216 SIZE.h
316    \cp packages.conf_hr packages.conf
317    
318    module unload latest_intel80
319    module unload mpich-gm-intel80
320    module load latest_intel81
321    module load mpich-gm-intel81
322    
323    cd ../build
324    \rm *
325    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
326    make depend
327    make -j
328    
329    cd ..
330    mkdir run
331    cd run
332    \rm *
333    \cp ../input/* .
334    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
335    ln -sf ../../../../run_template/* .
336    \rm pickup*
337    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
338    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
339    \cp ../build/mitgcmuv .
340    bsub < job_cosmos
341    
342    
343    
344    
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