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revision 1.55 by dimitri, Mon Feb 21 19:15:01 2005 UTC revision 1.66 by dimitri, Fri Sep 29 08:37:00 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    
15  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 22  cvs co MITgcm_contrib/high_res_cube/inpu
22  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
23  cvs co MITgcm_code  cvs co MITgcm_code
24  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
25  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
26    
27    
28  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 41  cd ..
41  mkdir run  mkdir run
42  cd run  cd run
43  \rm *  \rm *
44    \cp ../../tutorial_held_suarez_cs/input/grid* .
45  \cp ../input/* .  \cp ../input/* .
46  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
47  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 75  cd .. Line 85  cd ..
85  mkdir run  mkdir run
86  cd run  cd run
87  \rm *  \rm *
88    \cp ../../tutorial_held_suarez_cs/input/grid* .
89  \cp ../input/* .  \cp ../input/* .
90  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
91  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 82  cd run Line 93  cd run
93    
94  ##########################################################################  ##########################################################################
95  ##########################################################################  ##########################################################################
96  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
97    
98  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
99  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 99  cd .. Line 110  cd ..
110  mkdir run  mkdir run
111  cd run  cd run
112  \rm *  \rm *
113    \cp ../../tutorial_held_suarez_cs/input/grid* .
114  \cp ../input/* .  \cp ../input/* .
115  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
116  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 155  cd run Line 167  cd run
167  \cp ../input/* .  \cp ../input/* .
168  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
169  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
170    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
171    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
172    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
173    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
174    \cp ../build/mitgcmuv .
175    qsub job_altix
176    
177    
178    ##########################################################################
179    ##########################################################################
180    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
181    # uses s1500t_17x51 configuration
182    
183    cd MITgcm/verification/global_ocean.cs32x15/code
184    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
185    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
186    \cp SIZE.h_150 SIZE.h
187    \cp packages.conf_hr packages.conf
188    
189    cd ../build
190    \rm *
191    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
192    make depend
193    make -j
194    
195    cd ..
196    mkdir run
197    cd run
198    \rm *
199    \cp ../input/* .
200    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
201    ln -sf ../../../../run_template/* .
202    \rm pickup*
203    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
204    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
205    \cp ../build/mitgcmuv mitgcmuv150
206    qsub job_altix150
207    
208    
209    
210    
211    ##########################################################################
212    ##########################################################################
213    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
214    # uses s1500t_17x51 configuration
215    # example for running on c17-c20 using arrayd
216    
217    cd MITgcm/verification/global_ocean.cs32x15/code
218    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
219    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
220    \cp SIZE.h_375 SIZE.h
221    \cp packages.conf_hr packages.conf
222    
223    cd ../build
224    \rm *
225    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
226    make depend
227    make -j
228    
229    cd ..
230    mkdir run
231    cd run
232    \rm *
233    \cp ../input/* .
234    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
235    ln -sf ../../../../run_template/* .
236    \rm pickup*
237    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
238    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
239    \cp ../build/mitgcmuv .
240    job_c20_375cpu < /dev/null >&! output.run &
241    
242    
243    
244    
245    
246    
247    
248    
249    
250    
251    
252    
253    ##########################################################################
254    ##########################################################################
255    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
256    # uses s1500t_17x51 configuration
257    # example for running on c17-c20 using arrayd
258    
259    cd MITgcm/verification/global_ocean.cs32x15/code
260    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
261    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
262    \cp SIZE.h_375 SIZE.h
263    \cp packages.conf_hr packages.conf
264    
265    cd ../build
266    \rm *
267    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
268    make depend
269    make -j
270    
271    cd ..
272    mkdir run
273    cd run
274    \rm *
275    \cp ../input/* .
276    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
277    ln -sf ../../../../run_template/* .
278    \rm pickup*
279    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
280    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
281    \cp ../build/mitgcmuv .
282    job_c20_375cpu < /dev/null >&! output.run &
283    
284    
285    ##########################################################################
286    ##########################################################################
287    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
288    # uses s1500t_17x51 configuration
289    # example for running on c17-c20 using arrayd
290    
291    cd MITgcm/verification/global_ocean.cs32x15/code
292    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
293    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
294    \cp SIZE.h_500 SIZE.h
295    \cp packages.conf_hr packages.conf
296    
297    cd ../build
298    \rm *
299    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
300    make depend
301    make -j
302    
303    cd ..
304    mkdir run
305    cd run
306    \rm *
307    \cp ../input/* .
308    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
309    ln -sf ../../../../run_template/* .
310  \rm pickup*  \rm pickup*
311  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
312  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
313  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
314  qsub job_altix92  job_c19_500cpu < /dev/null >&! output.run &
315    
316    
317    
318    
319    
320    ##########################################################################
321    ##########################################################################
322    # 510*510*6*50, 216-cpu cube sphere on cosmos
323    
324    cd MITgcm/verification/global_ocean.cs32x15/code
325    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
326    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
327    \cp SIZE.h_216 SIZE.h
328    \cp packages.conf_hr packages.conf
329    
330    module unload latest_intel80
331    module unload mpich-gm-intel80
332    module load latest_intel81
333    module load mpich-gm-intel81
334    
335    cd ../build
336    \rm *
337    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
338    make depend
339    make -j
340    
341    cd ..
342    mkdir run
343    cd run
344    \rm *
345    \cp ../input/* .
346    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
347    ln -sf ../../../../run_template/* .
348    \rm pickup*
349    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
350    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
351    \cp ../build/mitgcmuv .
352    bsub < job_cosmos
353    
354    
355    
# Line 262  cd run Line 449  cd run
449  \cp ../input/* .  \cp ../input/* .
450  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
451  qsub job_orion  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*12)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
 niter0 = 290088, day = 4395, 13-Jan-2004, pChkptFreq = 379728000  
   
   
   
   
   
   
 #!/bin/csh  
 \cp data.pkg_hr data.pkg  
 \cp data.seaice_hr data.seaice  
 \cp data.exf_clim_hr data.exf_clim  
   
 \cp data_hr92 data  
 ./modpickup  
 \cp data.exf_hr92 data.exf  
 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k c20 216 runon 221-436 mitgcmuv  
 mkdir out.1992  
 \mv STDOUT.0000 *.data pickup*.meta out.1992  
 \cp data* out.1992  
 \rm STD* *.meta  
   
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