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revision 1.57 by dimitri, Tue Feb 22 01:20:54 2005 UTC revision 1.66 by dimitri, Fri Sep 29 08:37:00 2006 UTC
# Line 1  Line 1 
1  daInstructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    
15  ##########################################################################  ##########################################################################
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 22  cvs co MITgcm_contrib/high_res_cube/inpu
22  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
23  cvs co MITgcm_code  cvs co MITgcm_code
24  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
25  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
26    
27    
28  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 41  cd ..
41  mkdir run  mkdir run
42  cd run  cd run
43  \rm *  \rm *
44    \cp ../../tutorial_held_suarez_cs/input/grid* .
45  \cp ../input/* .  \cp ../input/* .
46  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
47  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 75  cd .. Line 85  cd ..
85  mkdir run  mkdir run
86  cd run  cd run
87  \rm *  \rm *
88    \cp ../../tutorial_held_suarez_cs/input/grid* .
89  \cp ../input/* .  \cp ../input/* .
90  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
91  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 110  cd ..
110  mkdir run  mkdir run
111  cd run  cd run
112  \rm *  \rm *
113    \cp ../../tutorial_held_suarez_cs/input/grid* .
114  \cp ../input/* .  \cp ../input/* .
115  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
116  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 155  cd run Line 167  cd run
167  \cp ../input/* .  \cp ../input/* .
168  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
169  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
170  \rm pickup*  \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
171  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
172  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
173    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
174  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
175  qsub job_altix  qsub job_altix
176    
177    
178  ##########################################################################  ##########################################################################
179  ##########################################################################  ##########################################################################
180    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
181    # uses s1500t_17x51 configuration
182    
183    cd MITgcm/verification/global_ocean.cs32x15/code
184    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
185    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
186    \cp SIZE.h_150 SIZE.h
187    \cp packages.conf_hr packages.conf
188    
189    cd ../build
190    \rm *
191    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
192    make depend
193    make -j
194    
195    cd ..
196    mkdir run
197    cd run
198    \rm *
199    \cp ../input/* .
200    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
201    ln -sf ../../../../run_template/* .
202    \rm pickup*
203    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
204    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
205    \cp ../build/mitgcmuv mitgcmuv150
206    qsub job_altix150
207    
208    
209    
210    
211    ##########################################################################
212    ##########################################################################
213  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
214  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
215  # example for running on c17-c20 using arrayd  # example for running on c17-c20 using arrayd
# Line 188  cd run Line 234  cd run
234  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
235  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
236  \rm pickup*  \rm pickup*
237  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
238  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
239    \cp ../build/mitgcmuv .
240    job_c20_375cpu < /dev/null >&! output.run &
241    
242    
243    
244    
245    
246    
247    
248    
249    
250    
251    
252    
253    ##########################################################################
254    ##########################################################################
255    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
256    # uses s1500t_17x51 configuration
257    # example for running on c17-c20 using arrayd
258    
259    cd MITgcm/verification/global_ocean.cs32x15/code
260    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
261    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
262    \cp SIZE.h_375 SIZE.h
263    \cp packages.conf_hr packages.conf
264    
265    cd ../build
266    \rm *
267    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
268    make depend
269    make -j
270    
271    cd ..
272    mkdir run
273    cd run
274    \rm *
275    \cp ../input/* .
276    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
277    ln -sf ../../../../run_template/* .
278    \rm pickup*
279    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
280    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
281  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
282  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
283    
# Line 220  cd run Line 308  cd run
308  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
309  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
310  \rm pickup*  \rm pickup*
311  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
312  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
313  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
314  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
315    
# Line 229  job_c19_500cpu < /dev/null >&! output.ru Line 317  job_c19_500cpu < /dev/null >&! output.ru
317    
318    
319    
320    ##########################################################################
321    ##########################################################################
322    # 510*510*6*50, 216-cpu cube sphere on cosmos
323    
324    cd MITgcm/verification/global_ocean.cs32x15/code
325    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
326    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
327    \cp SIZE.h_216 SIZE.h
328    \cp packages.conf_hr packages.conf
329    
330    module unload latest_intel80
331    module unload mpich-gm-intel80
332    module load latest_intel81
333    module load mpich-gm-intel81
334    
335    cd ../build
336    \rm *
337    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
338    make depend
339    make -j
340    
341    cd ..
342    mkdir run
343    cd run
344    \rm *
345    \cp ../input/* .
346    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
347    ln -sf ../../../../run_template/* .
348    \rm pickup*
349    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
350    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
351    \cp ../build/mitgcmuv .
352    bsub < job_cosmos
353    
354    
355    
356    
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