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revision 1.9 by dimitri, Sun Dec 14 02:06:15 2003 UTC revision 1.69 by dimitri, Tue Oct 10 23:27:04 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  
3    September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36    cvs co MITgcm_contrib/high_res_cube/README_ice
37    cvs co MITgcm_contrib/high_res_cube/code-mods
38    cvs co MITgcm_contrib/high_res_cube/input
39    cvs co MITgcm_contrib/high_res_cube/results
40    cvs co MITgcm_code
41    cvs co MITgcm/verification/global_ocean.cs32x15
42    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  ##########################################################################
46  cvs login ( CVS password: cvsanon )  ##########################################################################
47  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  # 32*32*6*15, 1-cpu cube sphere
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
48    
49  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
50  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
51  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
52  \rm mdsio_readfield.F  cd ../build
53    \rm *
54  cd ..  ../../../tools/genmake2 -mods=../code
 mkdir build  
 cd build  
 ../code/genmake2 -mods=../code  
55  make depend  make depend
56  make  make
   
57  cd ..  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \cp ../inp_thsice/* .  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
65    
# Line 42  comparison output is in: Line 68  comparison output is in:
68    
69  to use matlab to look at the output  to use matlab to look at the output
70  matlab  matlab
71  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
72    for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73             'QNETtave','FVtave','FUtave','EmPmRtave'}
74      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76  end  end
77    
78    heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79    mask=0*heff; mask(find(heff>.001))=1;
80    uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81    vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82    clf
83    subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84    subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85    subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86    subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87    
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # these can be obained from lou:/u/menemenl/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
94    
95  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
96  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_216 SIZE.h
99  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
100  \rm mdsio_readfield.F  
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia\
105    64_ifort+mpi_altix_nas
106    make depend
107    make -j
108    
109  cd ..  cd ..
110  mkdir build  mkdir run
111  cd build  cd run
112  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
113    \cp ../input/* .
114    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
115    ln -sf ../../../../run_template/* .
116    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
117    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
118    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
119    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
120    \cp ../build/mitgcmuv .
121    qsub job_altix
122    
123    
124    ##########################################################################
125    ##########################################################################
126    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
127    
128    cd MITgcm/verification/global_ocean.cs32x15/code
129    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
130    \cp ../code_alt/code.176t_8x4/* .
131    cd ../build
132    \rm *
133    ../../../tools/genmake2 -mods=../code
134  make depend  make depend
135  make  make
136    cd ..
137    mkdir run
138    cd run
139    \rm *
140    \cp ../../tutorial_held_suarez_cs/input/grid* .
141    \cp ../input/* .
142    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
143    ../build/mitgcmuv >& output.txt
144    
145    
146    ##########################################################################
147    ##########################################################################
148    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
149    
150    cd MITgcm/verification/global_ocean.cs32x15/code
151    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
152    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
153    \cp SIZE.h_mpi SIZE.h
154    
155    cd ../build
156    \rm *
157    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
158    make depend
159    make -j
160    
161  cd ..  cd ..
162  mkdir run  mkdir run
163  cd run  cd run
164  \cp ../inp_thsice/* .  \rm *
165    \cp ../../tutorial_held_suarez_cs/input/grid* .
166  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
167  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
168  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
169    
170    
171  ##########################################################################  ##########################################################################
172  ##########################################################################  ##########################################################################
173  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
174    # starting with pickup file from end of 1992
175    # requires input files in sudirectories run_template and ncep_rgau
176    
177    cd MITgcm/verification/global_ocean.cs32x15/code
178    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
179    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
180    \cp packages.conf_hr packages.conf
181    
182    cd ../build
183    \rm *
184    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
185    make depend
186    make -j
187    
188    cd ..
189    mkdir run
190    cd run
191    \rm *
192    \cp ../input/* .
193    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
194    qsub job_altix92_54t
195    
196  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
197  cvs login ( CVS password: cvsanon )  ##########################################################################
198  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  ##########################################################################
199  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
200  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  # uses s1500t_17x51 configuration
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
201    
202  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
203  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
204  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
205  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_150 SIZE.h
206  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
207  \rm mdsio_readfield.F  
208    cd ../build
209    \rm *
210    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
211    make depend
212    make -j
213    
214  cd ..  cd ..
215  mkdir build  mkdir run
216  cd build  cd run
217  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
218    \cp ../input/* .
219    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
220    ln -sf ../../../../run_template/* .
221    \rm pickup*
222    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
223    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
224    \cp ../build/mitgcmuv mitgcmuv150
225    qsub job_altix150
226    
227    
228    ##########################################################################
229    ##########################################################################
230    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
231    # uses s1500t_17x51 configuration
232    # example for running on c17-c20 using arrayd
233    
234    cd MITgcm/verification/global_ocean.cs32x15/code
235    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237    \cp SIZE.h_375 SIZE.h
238    \cp packages.conf_hr packages.conf
239    
240    cd ../build
241    \rm *
242    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243  make depend  make depend
244  make  make -j
245    
246  cd ..  cd ..
247  mkdir run  mkdir run
248  cd run  cd run
249  \cp ../inp_thsice/* .  \rm *
250  \cp ../input/* .  \cp ../input/* .
251  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252  \cp data_hr data  ln -sf ../../../../run_template/* .
253  \ln -sf ../../../../run_template/tile00* .  \rm pickup*
254  \ln -sf ../../../../run_template/LEV* .  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256  qsub job_orion  \cp ../build/mitgcmuv .
257    job_c20_375cpu < /dev/null >&! output.run &
258    
259    
260  ##########################################################################  ##########################################################################
261  ##########################################################################  ##########################################################################
262  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
263    # uses s1500t_17x51 configuration
264    # example for running on c17-c20 using arrayd
265    
266    cd MITgcm/verification/global_ocean.cs32x15/code
267    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269    \cp SIZE.h_375 SIZE.h
270    \cp packages.conf_hr packages.conf
271    
272    cd ../build
273    \rm *
274    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275    make depend
276    make -j
277    
278  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd ..
279  cvs login ( CVS password: cvsanon )  mkdir run
280  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cd run
281  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  \rm *
282  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  \cp ../input/* .
283  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  ln -sf ../../../../run_template/* .
285  cvs co -r checkpoint52d_pre MITgcm_code  \rm pickup*
286  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288    \cp ../build/mitgcmuv .
289    job_c20_375cpu < /dev/null >&! output.run &
290    
291    
292    ##########################################################################
293    ##########################################################################
294    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
295    # uses s1500t_17x51 configuration
296    # example for running on c17-c20 using arrayd
297    
298    cd MITgcm/verification/global_ocean.cs32x15/code
299    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301    \cp SIZE.h_500 SIZE.h
302    \cp packages.conf_hr packages.conf
303    
304    cd ../build
305    \rm *
306    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307    make depend
308    make -j
309    
310    cd ..
311    mkdir run
312    cd run
313    \rm *
314    \cp ../input/* .
315    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316    ln -sf ../../../../run_template/* .
317    \rm pickup*
318    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320    \cp ../build/mitgcmuv .
321    job_c19_500cpu < /dev/null >&! output.run &
322    
323    
324    ##########################################################################
325    ##########################################################################
326    # 510*510*6*50, 216-cpu cube sphere on cosmos
327    
328  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
329  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
331  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
332  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
333  \rm mdsio_readfield.F  
334    module unload latest_intel80
335    module unload mpich-gm-intel80
336    module load latest_intel81
337    module load mpich-gm-intel81
338    
339    cd ../build
340    \rm *
341    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
342    make depend
343    make -j
344    
345    cd ..
346    mkdir run
347    cd run
348    \rm *
349    \cp ../input/* .
350    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
351    ln -sf ../../../../run_template/* .
352    \rm pickup*
353    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
354    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
355    \cp ../build/mitgcmuv .
356    bsub < job_cosmos
357    
358    
359    ##########################################################################
360    ##########################################################################
361    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
362    # requires input files in sudirectories run_template and ncep_rgau
363    # presently residing under orion:/tmp1/dmenem/cube
364    
365    cd MITgcm/verification/global_ocean.cs32x15/code
366    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
367    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
368    \cp SIZE.h_54 SIZE.h
369    \cp packages.conf_hr packages.conf
370    
371    cd ../build
372    \rm *
373    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
374    make depend
375    make -j
376    
377  cd ..  cd ..
378  mkdir build  mkdir run
379  cd build  cd run
380  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
381    \cp ../input/* .
382    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
383    qsub job_orion
384    
385    
386    ##########################################################################
387    ##########################################################################
388    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
389    # requires input files in sudirectories run_template and ncep_rgau
390    # presently residing under orion:/tmp1/dmenem/cube
391    
392    cd MITgcm/verification/global_ocean.cs32x15/code
393    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
394    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
395    \cp SIZE.h_41 SIZE.h
396    \cp packages.conf_hr packages.conf
397    
398    cd ../build
399    \rm *
400    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
401  make depend  make depend
402  make  make -j
403    
404    cd ..
405    mkdir run
406    cd run
407    \rm *
408    \cp ../input/* .
409    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
410    qsub job_orion41
411    
412    
413    ##########################################################################
414    ##########################################################################
415    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
416    # requires input files in sudirectories run_template and ncep_rgau
417    # presently residing under orion:/tmp1/dmenem/cube
418    
419    cd MITgcm/verification/global_ocean.cs32x15/code
420    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
421    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
422    \cp SIZE.h_50 SIZE.h
423    \cp packages.conf_hr packages.conf
424    
425    cd ../build
426    \rm *
427    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
428    make depend
429    make -j
430    
431  cd ..  cd ..
432  mkdir run  mkdir run
433  cd run  cd run
434  \cp ../inp_thsice/* .  \rm *
435  \cp ../input/* .  \cp ../input/* .
436  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \cp data.pkg_hr data.pkg  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
437  qsub job_orion  qsub job_orion
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