/[MITgcm]/MITgcm_contrib/high_res_cube/README_ice
ViewVC logotype

Diff of /MITgcm_contrib/high_res_cube/README_ice

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.33 by dimitri, Tue Mar 16 17:20:07 2004 UTC revision 1.72 by dimitri, Sun Oct 15 17:38:42 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: March 9, 2004.  
3  Code and input used for integrating cube5.  =================
4    UPDATES
5    
6    October 15, 2006: 216-CPU code for cube40
7    
8    September 28, 2006: 216-CPU code for cube38
9    
10    September 4, 2006
11    Modified 32*32*6*15 experiments to use grid_cs32.* files from
12     verification/tutorial_held_suarez_cs/input instead of
13     tile* files from verification/global_ocean.cs32x15/input
14    
15    August 8, 2006: 216-CPU code and input used for cube37
16    using "June 10, 2006" MITgcm code.
17    
18    for online T/S profile diagnostics all that is needed is
19      profiles_init_fixed
20      profiles_inloop
21    see pkg/ecco/ecco_cost_init_fixed.F
22        pkg/ecco/cost_averagesfields.F
23    
24    
25  ##########################################################################  ##########################################################################
26  ##########################################################################  ##########################################################################
27  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
28    #
29    
30  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack    bash or sh shell:
31  cvs login ( CVS password: cvsanon )      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
32  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/README_ice      $ cvs login
33  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/code-mods        ( enter the CVS password: "cvsanon" )
34  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/input  
35  cvs co -r hrcube5 MITgcm_contrib/high_res_cube/results    tcsh or csh shell:
36  cvs co -r hrcube5 MITgcm_code      $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
37  cvs co -r hrcube5 MITgcm/verification/global_ocean.cs32x15      $ cvs login
38          ( enter the CVS password: "cvsanon" )
39    
40    cvs co MITgcm_contrib/high_res_cube/README_ice
41    cvs co MITgcm_contrib/high_res_cube/code-mods
42    cvs co MITgcm_contrib/high_res_cube/input
43    cvs co MITgcm_contrib/high_res_cube/results
44    cvs co MITgcm_code
45    cvs co MITgcm/verification/global_ocean.cs32x15
46    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
47    
48    
49  ##########################################################################  ##########################################################################
# Line 24  cvs co -r hrcube5 MITgcm/verification/gl Line 53  cvs co -r hrcube5 MITgcm/verification/gl
53  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
54  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
55  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
   
56  cd ../build  cd ../build
57    \rm *
58  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
59  make depend  make depend
 \rm getcon.F  
60  make  make
   
61  cd ..  cd ..
62  mkdir run  mkdir run
63  cd run  cd run
64    \rm *
65    \cp ../../tutorial_held_suarez_cs/input/grid* .
66  \cp ../input/* .  \cp ../input/* .
67  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
68  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 44  comparison output is in: Line 73  comparison output is in:
73  to use matlab to look at the output  to use matlab to look at the output
74  matlab  matlab
75    
76  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
77             'QNETtave','FVtave','FUtave','EmPmRtave'}
78      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
79      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
80  end  end
81    
82  heff=permute(readbin(['HEFF.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
83  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
84  uice=mask.*permute(readbin(['UICE.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
85  vice=mask.*permute(readbin(['VICE.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
86  clf  clf
87  subplot(221), mypcolor(uice(:,:,3)'), colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
88  subplot(222), mypcolor(uice(:,:,6)'), colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
89  subplot(223), mypcolor(vice(:,:,3)'), colorbar, title('vice, tile 3')  subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
90  subplot(224), mypcolor(vice(:,:,6)'), colorbar, title('vice, tile 6')  subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
91    
92    
93    ##########################################################################
94    ##########################################################################
95    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
96    # requires input files in sudirectories run_template and ncep_rgau
97    # these can be obained from lou:/u/menemenl/cube
98    
99    cd MITgcm/verification/global_ocean.cs32x15/code
100    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
101    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
102    \cp SIZE.h_216 SIZE.h
103    \cp packages.conf_hr packages.conf
104    
105    cd ../build
106    \rm *
107    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
108    make depend
109    make -j
110    
111    cd ..
112    mkdir run
113    cd run
114    \rm *
115    \cp ../input/* .
116    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
117    ln -sf ../../../../run_template/* .
118    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
119    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
120    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
121    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
122    \cp ../build/mitgcmuv .
123    qsub job_altix
124    
125    
126  ##########################################################################  ##########################################################################
127  ##########################################################################  ##########################################################################
128  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
129    
130    cd MITgcm/verification/global_ocean.cs32x15/code
131    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
132    \cp ../code_alt/code.176t_8x4/* .
133    cd ../build
134    \rm *
135    ../../../tools/genmake2 -mods=../code
136    make depend
137    make
138    cd ..
139    mkdir run
140    cd run
141    \rm *
142    \cp ../../tutorial_held_suarez_cs/input/grid* .
143    \cp ../input/* .
144    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145    ../build/mitgcmuv >& output.txt
146    
147    
148    ##########################################################################
149    ##########################################################################
150    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
151    
152  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
153  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 71  cd MITgcm/verification/global_ocean.cs32 Line 156  cd MITgcm/verification/global_ocean.cs32
156    
157  cd ../build  cd ../build
158  \rm *  \rm *
159  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
160  make depend  make depend
161  \rm getcon.F  make -j
 make  
162    
163  cd ..  cd ..
164  mkdir run  mkdir run
165  cd run  cd run
166  \rm *  \rm *
167    \cp ../../tutorial_held_suarez_cs/input/grid* .
168  \cp ../input/* .  \cp ../input/* .
169  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
170  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 87  mpirun -np 2 ../build/mitgcmuv Line 172  mpirun -np 2 ../build/mitgcmuv
172    
173  ##########################################################################  ##########################################################################
174  ##########################################################################  ##########################################################################
175  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
176    # starting with pickup file from end of 1992
177    # requires input files in sudirectories run_template and ncep_rgau
178    
179    cd MITgcm/verification/global_ocean.cs32x15/code
180    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
181    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
182    \cp packages.conf_hr packages.conf
183    
184    cd ../build
185    \rm *
186    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
187    make depend
188    make -j
189    
190    cd ..
191    mkdir run
192    cd run
193    \rm *
194    \cp ../input/* .
195    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
196    qsub job_altix92_54t
197    
198    
199    ##########################################################################
200    ##########################################################################
201    # 510*510*6*50, 1500-tile, 150-cpu, excludes land
202    # uses s1500t_17x51 configuration
203    
204    cd MITgcm/verification/global_ocean.cs32x15/code
205    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207    \cp SIZE.h_150 SIZE.h
208    \cp packages.conf_hr packages.conf
209    
210    cd ../build
211    \rm *
212    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
213    make depend
214    make -j
215    
216    cd ..
217    mkdir run
218    cd run
219    \rm *
220    \cp ../input/* .
221    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222    ln -sf ../../../../run_template/* .
223    \rm pickup*
224    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226    \cp ../build/mitgcmuv mitgcmuv150
227    qsub job_altix150
228    
229    
230    ##########################################################################
231    ##########################################################################
232    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
233    # uses s1500t_17x51 configuration
234    # example for running on c17-c20 using arrayd
235    
236    cd MITgcm/verification/global_ocean.cs32x15/code
237    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
238    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
239    \cp SIZE.h_375 SIZE.h
240    \cp packages.conf_hr packages.conf
241    
242    cd ../build
243    \rm *
244    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
245    make depend
246    make -j
247    
248    cd ..
249    mkdir run
250    cd run
251    \rm *
252    \cp ../input/* .
253    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254    ln -sf ../../../../run_template/* .
255    \rm pickup*
256    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258    \cp ../build/mitgcmuv .
259    job_c20_375cpu < /dev/null >&! output.run &
260    
261    
262    ##########################################################################
263    ##########################################################################
264    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
265    # uses s1500t_17x51 configuration
266    # example for running on c17-c20 using arrayd
267    
268    cd MITgcm/verification/global_ocean.cs32x15/code
269    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
270    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
271    \cp SIZE.h_375 SIZE.h
272    \cp packages.conf_hr packages.conf
273    
274    cd ../build
275    \rm *
276    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
277    make depend
278    make -j
279    
280    cd ..
281    mkdir run
282    cd run
283    \rm *
284    \cp ../input/* .
285    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286    ln -sf ../../../../run_template/* .
287    \rm pickup*
288    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290    \cp ../build/mitgcmuv .
291    job_c20_375cpu < /dev/null >&! output.run &
292    
293    
294    ##########################################################################
295    ##########################################################################
296    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
297    # uses s1500t_17x51 configuration
298    # example for running on c17-c20 using arrayd
299    
300    cd MITgcm/verification/global_ocean.cs32x15/code
301    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
302    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
303    \cp SIZE.h_500 SIZE.h
304    \cp packages.conf_hr packages.conf
305    
306    cd ../build
307    \rm *
308    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
309    make depend
310    make -j
311    
312    cd ..
313    mkdir run
314    cd run
315    \rm *
316    \cp ../input/* .
317    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318    ln -sf ../../../../run_template/* .
319    \rm pickup*
320    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322    \cp ../build/mitgcmuv .
323    job_c19_500cpu < /dev/null >&! output.run &
324    
325    
326    ##########################################################################
327    ##########################################################################
328    # 510*510*6*50, 216-cpu cube sphere on cosmos
329    
330    cd MITgcm/verification/global_ocean.cs32x15/code
331    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
333    \cp SIZE.h_216 SIZE.h
334    \cp packages.conf_hr packages.conf
335    
336    module unload latest_intel80
337    module unload mpich-gm-intel80
338    module load latest_intel81
339    module load mpich-gm-intel81
340    
341    cd ../build
342    \rm *
343    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
344    make depend
345    make -j
346    
347    cd ..
348    mkdir run
349    cd run
350    \rm *
351    \cp ../input/* .
352    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353    ln -sf ../../../../run_template/* .
354    \rm pickup*
355    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357    \cp ../build/mitgcmuv .
358    bsub < job_cosmos
359    
360    
361    ##########################################################################
362    ##########################################################################
363    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
364  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
365  # presently residing under orion:/tmp1/dmenem/cube  # presently residing under orion:/tmp1/dmenem/cube
366    
# Line 99  cd MITgcm/verification/global_ocean.cs32 Line 372  cd MITgcm/verification/global_ocean.cs32
372    
373  cd ../build  cd ../build
374  \rm *  \rm *
375  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
376  make depend  make depend
377  \rm getcon.F  make -j
 make  
378    
379  cd ..  cd ..
380  mkdir run  mkdir run
# Line 127  cd MITgcm/verification/global_ocean.cs32 Line 399  cd MITgcm/verification/global_ocean.cs32
399    
400  cd ../build  cd ../build
401  \rm *  \rm *
402  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
403  make depend  make depend
404  \rm getcon.F  make -j
 make  
405    
406  cd ..  cd ..
407  mkdir run  mkdir run
# Line 143  qsub job_orion41 Line 414  qsub job_orion41
414    
415  ##########################################################################  ##########################################################################
416  ##########################################################################  ##########################################################################
417  # 510*510*6*50, 216-cpu cube sphere on altix with efc  # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
418  # requires input files in sudirectories run_template and ncep_rgau  # requires input files in sudirectories run_template and ncep_rgau
419  # these can be obained from lou:/u/menemenl/cube  # presently residing under orion:/tmp1/dmenem/cube
420    
421  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
422  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
423  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
424  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_50 SIZE.h
425  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
426    
427  cd ../build  cd ../build
428  \rm *  \rm *
429  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
430  make depend  make depend
431  \rm getcon.F  make -j
 make  
432    
433  cd ..  cd ..
434  mkdir run  mkdir run
# Line 166  cd run Line 436  cd run
436  \rm *  \rm *
437  \cp ../input/* .  \cp ../input/* .
438  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
439  qsub job_altix  qsub job_orion
   
   
 ##########################################################################  
 ##########################################################################  
 # matlab script for generating pChkptFreq  
   
 nTimeSteps=26352;  
 for niter0=216:26352:(26352*11)  
  pChkptFreq=(niter0+nTimeSteps)*1200;  
  day=pChkptFreq/24/60/60;  
  disp(['niter0=' int2str(niter0) ',day=' int2str(day) ', ' ...  
  datestr(datenum(1992,1,1)+day) ', pChkptFreq=' int2str(pChkptFreq)])  
 end  
   
 niter0 = 216   , day = 369 , 04-Jan-1993, pChkptFreq = 31881600  
 niter0 = 26568 , day = 735 , 05-Jan-1994, pChkptFreq = 63504000  
 niter0 = 52920 , day = 1101, 06-Jan-1995, pChkptFreq = 95126400  
 niter0 = 79272 , day = 1467, 07-Jan-1996, pChkptFreq = 126748800  
 niter0 = 105624, day = 1833, 07-Jan-1997, pChkptFreq = 158371200  
 niter0 = 131976, day = 2199, 08-Jan-1998, pChkptFreq = 189993600  
 niter0 = 158328, day = 2565, 09-Jan-1999, pChkptFreq = 221616000  
 niter0 = 184680, day = 2931, 10-Jan-2000, pChkptFreq = 253238400  
 niter0 = 211032, day = 3297, 10-Jan-2001, pChkptFreq = 284860800  
 niter0 = 237384, day = 3663, 11-Jan-2002, pChkptFreq = 316483200  
 niter0 = 263736, day = 4029, 12-Jan-2003, pChkptFreq = 348105600  
Legend:
Removed from v.1.33  
changed lines
  Added in v.1.72
  ViewVC Help
Powered by ViewVC 1.1.22