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revision 1.59 by dimitri, Tue May 3 16:07:36 2005 UTC revision 1.73 by dimitri, Sun Oct 15 18:23:06 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 17, 2005  
3  Code and input used for integrating cube22.  =================
4    UPDATES
5    
6    October 15, 2006: 216-CPU code for cube40
7    
8    September 28, 2006: 216-CPU code for cube38
9    
10    September 4, 2006
11    Modified 32*32*6*15 experiments to use grid_cs32.* files from
12     verification/tutorial_held_suarez_cs/input instead of
13     tile* files from verification/global_ocean.cs32x15/input
14    
15    August 8, 2006: 216-CPU code and input used for cube37
16    using "June 10, 2006" MITgcm code.
17    
18    for online T/S profile diagnostics all that is needed is
19      profiles_init_fixed
20      profiles_inloop
21    see pkg/ecco/ecco_cost_init_fixed.F
22        pkg/ecco/cost_averagesfields.F
23    
24    
25  ##########################################################################  ##########################################################################
26  ##########################################################################  ##########################################################################
27  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
28    #
29    
30      bash or sh shell:
31        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
32        $ cvs login
33          ( enter the CVS password: "cvsanon" )
34    
35      tcsh or csh shell:
36        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
37        $ cvs login
38          ( enter the CVS password: "cvsanon" )
39    
40  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
41  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 43  cvs co MITgcm_contrib/high_res_cube/inpu
43  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
44  cvs co MITgcm_code  cvs co MITgcm_code
45  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
46  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/tutorial_held_suarez_cs/input
47    
48    
49    ##########################################################################
50    ##########################################################################
51    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
52    # requires input files in sudirectories run_template and ncep_rgau
53    # these can be obained from lou:/u/menemenl/cube
54    
55    cd MITgcm/verification/global_ocean.cs32x15/code
56    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
57    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
58    \cp SIZE.h_216 SIZE.h
59    \cp packages.conf_hr packages.conf
60    
61    cd ../build
62    \rm *
63    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
64    make depend
65    make -j
66    
67    cd ..
68    mkdir run
69    cd run
70    \rm *
71    \cp ../input/* .
72    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
73    ln -sf ../../../../run_template/* .
74    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
75    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
76    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
77    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
78    \cp ../build/mitgcmuv .
79    qsub job_altix
80    
81    
82  ##########################################################################  ##########################################################################
# Line 32  cd .. Line 95  cd ..
95  mkdir run  mkdir run
96  cd run  cd run
97  \rm *  \rm *
98    \cp ../../tutorial_held_suarez_cs/input/grid* .
99  \cp ../input/* .  \cp ../input/* .
100  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
101  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 75  cd .. Line 139  cd ..
139  mkdir run  mkdir run
140  cd run  cd run
141  \rm *  \rm *
142    \cp ../../tutorial_held_suarez_cs/input/grid* .
143  \cp ../input/* .  \cp ../input/* .
144  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 99  cd .. Line 164  cd ..
164  mkdir run  mkdir run
165  cd run  cd run
166  \rm *  \rm *
167    \cp ../../tutorial_held_suarez_cs/input/grid* .
168  \cp ../input/* .  \cp ../input/* .
169  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
170  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 132  qsub job_altix92_54t Line 198  qsub job_altix92_54t
198    
199  ##########################################################################  ##########################################################################
200  ##########################################################################  ##########################################################################
201  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
202  # requires input files in sudirectories run_template and ncep_rgau  # uses s1500t_17x51 configuration
 # these can be obained from lou:/u/menemenl/cube  
203    
204  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
205  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
206  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
207  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_150 SIZE.h
208  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
209    
210  cd ../build  cd ../build
# Line 156  cd run Line 221  cd run
221  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
222  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
223  \rm pickup*  \rm pickup*
224  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
225  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
226  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv mitgcmuv150
227  qsub job_altix  qsub job_altix150
228    
229    
230  ##########################################################################  ##########################################################################
231  ##########################################################################  ##########################################################################
232  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
233  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
234    # example for running on c17-c20 using arrayd
235    
236  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
237  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
238  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
239  \cp SIZE.h_150 SIZE.h  \cp SIZE.h_375 SIZE.h
240  \cp packages.conf_hr packages.conf  \cp packages.conf_hr packages.conf
241    
242  cd ../build  cd ../build
# Line 186  cd run Line 253  cd run
253  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
254  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
255  \rm pickup*  \rm pickup*
256  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
257  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
258  \cp ../build/mitgcmuv mitgcmuv150  \cp ../build/mitgcmuv .
259  qsub job_altix150  job_c20_375cpu < /dev/null >&! output.run &
   
   
   
   
   
   
   
   
   
   
   
   
   
260    
261    
262  ##########################################################################  ##########################################################################
# Line 231  cd run Line 285  cd run
285  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
286  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
287  \rm pickup*  \rm pickup*
288  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
289  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
290  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
291  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
292    
# Line 263  cd run Line 317  cd run
317  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
318  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
319  \rm pickup*  \rm pickup*
320  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216.data  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
321  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216.data  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
322  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
323  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
324    
325    
326    ##########################################################################
327    ##########################################################################
328    # 510*510*6*50, 216-cpu cube sphere on cosmos
329    
330    cd MITgcm/verification/global_ocean.cs32x15/code
331    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
333    \cp SIZE.h_216 SIZE.h
334    \cp packages.conf_hr packages.conf
335    
336    module unload latest_intel80
337    module unload mpich-gm-intel80
338    module load latest_intel81
339    module load mpich-gm-intel81
340    
341    cd ../build
342    \rm *
343    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
344    make depend
345    make -j
346    
347    cd ..
348    mkdir run
349    cd run
350    \rm *
351    \cp ../input/* .
352    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
353    ln -sf ../../../../run_template/* .
354    \rm pickup*
355    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
356    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
357    \cp ../build/mitgcmuv .
358    bsub < job_cosmos
   
   
   
   
359    
360    
361  ##########################################################################  ##########################################################################
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