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revision 1.75 by dimitri, Fri Nov 3 23:17:42 2006 UTC revision 1.88 by dimitri, Wed Jan 31 01:57:41 2007 UTC
# Line 1  Line 1 
1    
2  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
3    
4    Forcing fields and other input files needed for the CS510
5    configuration can be obtained from
6    http://ecco2.org/products/model_setups/cs510.html
7    
8  =================  =================
9  UPDATES  UPDATES
10    
11  November 3, 2006: 216-CPU code for cube43  January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
12  Martin's growth.F routine and Patrick's pkg/seaice diagnostics  
13    January 5, 2006: cube50, like cube48 but with snow advection
14    
15    December 30, 2006: updates for cube49, the first
16    "blend" integration.
17    
18    December 11, 2006: preparing for cube47, same as cube43
19    but with Arctic monthly river runoff climatology.
20    
21    December 5, 2006: 216-CPU code for cube46
22    Changed diagnostics to accomodate JMCs latest and some
23    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
24    to speed up code.
25    
26    November 7, 2006: 216-CPU code for cube43
27    Bug fixes in growth.F routine and new set of diagnostics
28    
29  October 15, 2006: 216-CPU code for cube40  October 15, 2006: 216-CPU code for cube40
30    
# Line 24  for online T/S profile diagnostics all t Line 44  for online T/S profile diagnostics all t
44  see pkg/ecco/ecco_cost_init_fixed.F  see pkg/ecco/ecco_cost_init_fixed.F
45      pkg/ecco/cost_averagesfields.F      pkg/ecco/cost_averagesfields.F
46    
47    ##########################################################################
48    ##########################################################################
49    # Get forcing files, etc.
50    # Example below is for cube46 on /nobackup2a/menemenl
51    
52    cd /nobackup2a/menemenl
53    mkdir cube47
54    cd cube47
55    ln -sf ../run_template .
56    ln -sf ../ncep_rgau .
57    
58    
59  ##########################################################################  ##########################################################################
60  ##########################################################################  ##########################################################################
61  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
 #  
62    
63    bash or sh shell:    bash or sh shell:
64      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
# Line 52  cvs co MITgcm/verification/tutorial_held Line 82  cvs co MITgcm/verification/tutorial_held
82  ##########################################################################  ##########################################################################
83  ##########################################################################  ##########################################################################
84  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
85    
86  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
87  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 63  cd MITgcm/verification/global_ocean.cs32 Line 91  cd MITgcm/verification/global_ocean.cs32
91    
92  cd ../build  cd ../build
93  \rm *  \rm *
94  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
95  make depend  make depend
96  make -j  make -j
97    
# Line 76  cd run Line 104  cd run
104  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
105  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
106  \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
107  ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
108  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
109  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
110  qsub job_altix  qsub job_altix
111    
# Line 89  qsub job_altix Line 117  qsub job_altix
117  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
118  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
119  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
120    \rm CPP_EEOPTIONS.h
121  cd ../build  cd ../build
122  \rm *  \rm *
123  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
# Line 109  comparison output is in: Line 138  comparison output is in:
138  to use matlab to look at the output  to use matlab to look at the output
139  matlab  matlab
140    
141  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
142           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
143      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
144      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
145  end  end
146    
147  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
148  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
149  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
150  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
151  clf  clf
152  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
153  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
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