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revision 1.62 by dimitri, Sat Feb 25 16:59:00 2006 UTC revision 1.77 by dimitri, Wed Nov 22 07:21:31 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last updated: February 25, 2005  
3  216-CPU code and input used for integrating cube29.  =================
4    UPDATES
5    
6    November 22, 2006: 216-CPU code for cube44
7    Changed diagnostics, yet again.
8    
9    November 7, 2006: 216-CPU code for cube43
10    Bug fixes in growth.F routine and new set of diagnostics
11    
12    October 15, 2006: 216-CPU code for cube40
13    
14    September 28, 2006: 216-CPU code for cube38
15    
16    September 4, 2006
17    Modified 32*32*6*15 experiments to use grid_cs32.* files from
18     verification/tutorial_held_suarez_cs/input instead of
19     tile* files from verification/global_ocean.cs32x15/input
20    
21    August 8, 2006: 216-CPU code and input used for cube37
22    using "June 10, 2006" MITgcm code.
23    
24    for online T/S profile diagnostics all that is needed is
25      profiles_init_fixed
26      profiles_inloop
27    see pkg/ecco/ecco_cost_init_fixed.F
28        pkg/ecco/cost_averagesfields.F
29    
30    
31  ##########################################################################  ##########################################################################
32  ##########################################################################  ##########################################################################
33  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
34    #
35    
36      bash or sh shell:
37        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
38        $ cvs login
39          ( enter the CVS password: "cvsanon" )
40    
41      tcsh or csh shell:
42        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
43        $ cvs login
44          ( enter the CVS password: "cvsanon" )
45    
46  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
47  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
# Line 13  cvs co MITgcm_contrib/high_res_cube/inpu Line 49  cvs co MITgcm_contrib/high_res_cube/inpu
49  cvs co MITgcm_contrib/high_res_cube/results  cvs co MITgcm_contrib/high_res_cube/results
50  cvs co MITgcm_code  cvs co MITgcm_code
51  cvs co MITgcm/verification/global_ocean.cs32x15  cvs co MITgcm/verification/global_ocean.cs32x15
52    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
53    
54    
55    ##########################################################################
56    ##########################################################################
57    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
58    # requires input files in sudirectories run_template and ncep_rgau
59    # these can be obained from lou:/u/menemenl/cube
60    
61    cd MITgcm/verification/global_ocean.cs32x15/code
62    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
63    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
64    \cp SIZE.h_216 SIZE.h
65    \cp packages.conf_hr packages.conf
66    
67    cd ../build
68    \rm *
69    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
70    make depend
71    make -j
72    
73  # remove check in config_check.F  cd ..
74  > C-TRM     IF ( highOrderVorticity .AND. useCubedSphereExchange ) THEN  mkdir run
75  > C-TRM       WRITE(msgBuf,'(2A)')  cd run
76  > C-TRM    &   'CONFIG_CHECK: highOrderVorticity Scheme does not work',  \rm *
77  > C-TRM    &   ' on CubedSphere grid'  \cp ../input/* .
78  > C-TRM       CALL PRINT_ERROR( msgBuf , myThid)  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
79  > C-TRM       STOP 'ABNORMAL END: S/R CONFIG_CHECK'  ln -sf ../../../../run_template/* .
80  > C-TRM     ENDIF  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
81    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
82    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
83    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
84    \cp ../build/mitgcmuv .
85    qsub job_altix
86    
87    
88  ##########################################################################  ##########################################################################
# Line 40  cd .. Line 101  cd ..
101  mkdir run  mkdir run
102  cd run  cd run
103  \rm *  \rm *
104    \cp ../../tutorial_held_suarez_cs/input/grid* .
105  \cp ../input/* .  \cp ../input/* .
106  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
107  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 50  comparison output is in: Line 112  comparison output is in:
112  to use matlab to look at the output  to use matlab to look at the output
113  matlab  matlab
114    
115  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
116           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
117      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
118      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
119  end  end
120    
121  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
122  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
123  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
124  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
125  clf  clf
126  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
127  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 83  cd .. Line 145  cd ..
145  mkdir run  mkdir run
146  cd run  cd run
147  \rm *  \rm *
148    \cp ../../tutorial_held_suarez_cs/input/grid* .
149  \cp ../input/* .  \cp ../input/* .
150  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
151  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
# Line 107  cd .. Line 170  cd ..
170  mkdir run  mkdir run
171  cd run  cd run
172  \rm *  \rm *
173    \cp ../../tutorial_held_suarez_cs/input/grid* .
174  \cp ../input/* .  \cp ../input/* .
175  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
176  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
# Line 140  qsub job_altix92_54t Line 204  qsub job_altix92_54t
204    
205  ##########################################################################  ##########################################################################
206  ##########################################################################  ##########################################################################
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup*  
 ln -sf ../../../../run_template/pickup.0000000216.cube27 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube27 pickup_seaice.0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
 ##########################################################################  
207  # 510*510*6*50, 1500-tile, 150-cpu, excludes land  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
208  # uses s1500t_17x51 configuration  # uses s1500t_17x51 configuration
209    
# Line 201  ln -sf  ../../../../run_template/pickup_ Line 233  ln -sf  ../../../../run_template/pickup_
233  qsub job_altix150  qsub job_altix150
234    
235    
   
   
236  ##########################################################################  ##########################################################################
237  ##########################################################################  ##########################################################################
238  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
# Line 235  ln -sf  ../../../../run_template/pickup_ Line 265  ln -sf  ../../../../run_template/pickup_
265  job_c20_375cpu < /dev/null >&! output.run &  job_c20_375cpu < /dev/null >&! output.run &
266    
267    
   
   
   
   
   
   
   
   
   
   
268  ##########################################################################  ##########################################################################
269  ##########################################################################  ##########################################################################
270  # 510*510*6*50, 1500-tile, 375-cpu, excludes land  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
# Line 309  ln -sf  ../../../../run_template/pickup_ Line 329  ln -sf  ../../../../run_template/pickup_
329  job_c19_500cpu < /dev/null >&! output.run &  job_c19_500cpu < /dev/null >&! output.run &
330    
331    
   
   
   
332  ##########################################################################  ##########################################################################
333  ##########################################################################  ##########################################################################
334  # 510*510*6*50, 216-cpu cube sphere on cosmos  # 510*510*6*50, 216-cpu cube sphere on cosmos
# Line 347  ln -sf  ../../../../run_template/pickup_ Line 364  ln -sf  ../../../../run_template/pickup_
364  bsub < job_cosmos  bsub < job_cosmos
365    
366    
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
   
367  ##########################################################################  ##########################################################################
368  ##########################################################################  ##########################################################################
369  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
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