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revision 1.69 by dimitri, Tue Oct 10 23:27:04 2006 UTC revision 1.79 by dimitri, Wed Dec 6 00:50:56 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
3    =================
4    UPDATES
5    
6    December 5, 2006: 216-CPU code for cube46
7    Changed diagnostics to accomodate JMCs latest and some
8    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
9    to speed up code.
10    
11    November 7, 2006: 216-CPU code for cube43
12    Bug fixes in growth.F routine and new set of diagnostics
13    
14    October 15, 2006: 216-CPU code for cube40
15    
16  September 28, 2006: 216-CPU code for cube38  September 28, 2006: 216-CPU code for cube38
17    
18  September 4, 2006  September 4, 2006
# Line 7  Modified 32*32*6*15 experiments to use g Line 20  Modified 32*32*6*15 experiments to use g
20   verification/tutorial_held_suarez_cs/input instead of   verification/tutorial_held_suarez_cs/input instead of
21   tile* files from verification/global_ocean.cs32x15/input   tile* files from verification/global_ocean.cs32x15/input
22    
23  August 8, 2006  August 8, 2006: 216-CPU code and input used for cube37
 216-CPU code and input used for integrating cube37  
24  using "June 10, 2006" MITgcm code.  using "June 10, 2006" MITgcm code.
25    
26  for online T/S profile diagnostics all that is needed is  for online T/S profile diagnostics all that is needed is
# Line 44  cvs co MITgcm/verification/tutorial_held Line 56  cvs co MITgcm/verification/tutorial_held
56    
57  ##########################################################################  ##########################################################################
58  ##########################################################################  ##########################################################################
59    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
60    # requires input files in sudirectories run_template and ncep_rgau
61    # these can be obained from lou:/u/menemenl/cube
62    
63    cd MITgcm/verification/global_ocean.cs32x15/code
64    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
65    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
66    \cp SIZE.h_216 SIZE.h
67    \cp packages.conf_hr packages.conf
68    
69    cd ../build
70    \rm *
71    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
72    make depend
73    make -j
74    
75    cd ..
76    mkdir run
77    cd run
78    \rm *
79    \cp ../input/* .
80    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
81    ln -sf ../../../../run_template/* .
82    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
83    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
84    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
85    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
86    \cp ../build/mitgcmuv .
87    qsub job_altix
88    
89    
90    ##########################################################################
91    ##########################################################################
92  # 32*32*6*15, 1-cpu cube sphere  # 32*32*6*15, 1-cpu cube sphere
93    
94  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 69  comparison output is in: Line 114  comparison output is in:
114  to use matlab to look at the output  to use matlab to look at the output
115  matlab  matlab
116    
117  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
118           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
119      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
120      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
121  end  end
122    
123  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
124  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
125  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
126  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
127  clf  clf
128  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
129  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 87  subplot(224), mypcolor(vice(:,:,6)'); co Line 132  subplot(224), mypcolor(vice(:,:,6)'); co
132    
133    
134  ##########################################################################  ##########################################################################
 ##########################################################################  
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of  
 ../../../tools/build_options/linux_ia\  
 64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin  
 \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  
 ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
135  ##########################################################################  ##########################################################################
136  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
137    
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