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revision 1.67 by dimitri, Wed Oct 4 17:47:26 2006 UTC revision 1.83 by dimitri, Thu Dec 21 15:16:17 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2    
3    Forcing fields and other input files needed for the CS510
4    configuration can be obtained from
5    http://ecco2.org/products/model_setups/cs510.html
6    
7    =================
8    UPDATES
9    
10    December 11, 2006: preparing for cube47, same as cube43
11    but with Arctic monthly river runoff climatology
12    
13    December 5, 2006: 216-CPU code for cube46
14    Changed diagnostics to accomodate JMCs latest and some
15    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
16    to speed up code.
17    
18    November 7, 2006: 216-CPU code for cube43
19    Bug fixes in growth.F routine and new set of diagnostics
20    
21    October 15, 2006: 216-CPU code for cube40
22    
23  September 28, 2006: 216-CPU code for cube38  September 28, 2006: 216-CPU code for cube38
24    
25  September 4, 2006  September 4, 2006
# Line 7  Modified 32*32*6*15 experiments to use g Line 27  Modified 32*32*6*15 experiments to use g
27   verification/tutorial_held_suarez_cs/input instead of   verification/tutorial_held_suarez_cs/input instead of
28   tile* files from verification/global_ocean.cs32x15/input   tile* files from verification/global_ocean.cs32x15/input
29    
30  August 8, 2006  August 8, 2006: 216-CPU code and input used for cube37
 216-CPU code and input used for integrating cube37  
31  using "June 10, 2006" MITgcm code.  using "June 10, 2006" MITgcm code.
32    
33  for online T/S profile diagnostics all that is needed is  for online T/S profile diagnostics all that is needed is
# Line 17  for online T/S profile diagnostics all t Line 36  for online T/S profile diagnostics all t
36  see pkg/ecco/ecco_cost_init_fixed.F  see pkg/ecco/ecco_cost_init_fixed.F
37      pkg/ecco/cost_averagesfields.F      pkg/ecco/cost_averagesfields.F
38    
39    ##########################################################################
40    ##########################################################################
41    # Get forcing files, etc.
42    # Example below is for cube46 on /nobackup2a/menemenl
43    
44    cd /nobackup2a/menemenl
45    mkdir cube47
46    cd cube47
47    ln -sf ../run_template .
48    ln -sf ../ncep_rgau .
49    
50    
51  ##########################################################################  ##########################################################################
52  ##########################################################################  ##########################################################################
53  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
54    
55      bash or sh shell:
56        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
57        $ cvs login
58          ( enter the CVS password: "cvsanon" )
59    
60      tcsh or csh shell:
61        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
62        $ cvs login
63          ( enter the CVS password: "cvsanon" )
64    
65  cvs co MITgcm_contrib/high_res_cube/README_ice  cvs co MITgcm_contrib/high_res_cube/README_ice
66  cvs co MITgcm_contrib/high_res_cube/code-mods  cvs co MITgcm_contrib/high_res_cube/code-mods
67  cvs co MITgcm_contrib/high_res_cube/input  cvs co MITgcm_contrib/high_res_cube/input
# Line 33  cvs co MITgcm/verification/tutorial_held Line 73  cvs co MITgcm/verification/tutorial_held
73    
74  ##########################################################################  ##########################################################################
75  ##########################################################################  ##########################################################################
76    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
77    
78    cd MITgcm/verification/global_ocean.cs32x15/code
79    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
80    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
81    \cp SIZE.h_216 SIZE.h
82    \cp packages.conf_hr packages.conf
83    
84    cd ../build
85    \rm *
86    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
87    make depend
88    make -j
89    
90    cd ..
91    mkdir run
92    cd run
93    \rm *
94    \cp ../input/* .
95    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
96    ln -sf ../../../../run_template/* .
97    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
98    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
99    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
100    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
101    \cp ../build/mitgcmuv .
102    qsub job_altix
103    
104    
105    ##########################################################################
106    ##########################################################################
107  # 32*32*6*15, 1-cpu cube sphere  # 32*32*6*15, 1-cpu cube sphere
108    
109  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
# Line 58  comparison output is in: Line 129  comparison output is in:
129  to use matlab to look at the output  to use matlab to look at the output
130  matlab  matlab
131    
132  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
133           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
134      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
135      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
136  end  end
137    
138  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
139  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
140  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
141  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
142  clf  clf
143  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
144  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 76  subplot(224), mypcolor(vice(:,:,6)'); co Line 147  subplot(224), mypcolor(vice(:,:,6)'); co
147    
148    
149  ##########################################################################  ##########################################################################
 ##########################################################################  
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of  
 ../../../tools/build_options/linux_ia\  
 64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin  
 \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  
 ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38  
 pickup_seaice.\  
 0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
150  ##########################################################################  ##########################################################################
151  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
152    
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