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revision 1.71 by dimitri, Thu Oct 12 06:09:38 2006 UTC revision 1.89 by dimitri, Fri Feb 2 01:05:25 2007 UTC
# Line 1  Line 1 
1    
2  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
3    
4    Forcing fields and other input files needed for the CS510
5    configuration can be obtained from
6    http://ecco2.org/products/model_setups/cs510.html
7    
8    =================
9    UPDATES
10    
11    February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.0012)
12                      removed UVEL and VVEL from diagnostics
13    
14    January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
15    
16    January 5, 2006: cube50, like cube48 but with snow advection
17    
18    December 30, 2006: updates for cube49, the first
19    "blend" integration.
20    
21    December 11, 2006: preparing for cube47, same as cube43
22    but with Arctic monthly river runoff climatology.
23    
24    December 5, 2006: 216-CPU code for cube46
25    Changed diagnostics to accomodate JMCs latest and some
26    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
27    to speed up code.
28    
29    November 7, 2006: 216-CPU code for cube43
30    Bug fixes in growth.F routine and new set of diagnostics
31    
32    October 15, 2006: 216-CPU code for cube40
33    
34  September 28, 2006: 216-CPU code for cube38  September 28, 2006: 216-CPU code for cube38
35    
36  September 4, 2006  September 4, 2006
# Line 7  Modified 32*32*6*15 experiments to use g Line 38  Modified 32*32*6*15 experiments to use g
38   verification/tutorial_held_suarez_cs/input instead of   verification/tutorial_held_suarez_cs/input instead of
39   tile* files from verification/global_ocean.cs32x15/input   tile* files from verification/global_ocean.cs32x15/input
40    
41  August 8, 2006  August 8, 2006: 216-CPU code and input used for cube37
 216-CPU code and input used for integrating cube37  
42  using "June 10, 2006" MITgcm code.  using "June 10, 2006" MITgcm code.
43    
44  for online T/S profile diagnostics all that is needed is  for online T/S profile diagnostics all that is needed is
# Line 17  for online T/S profile diagnostics all t Line 47  for online T/S profile diagnostics all t
47  see pkg/ecco/ecco_cost_init_fixed.F  see pkg/ecco/ecco_cost_init_fixed.F
48      pkg/ecco/cost_averagesfields.F      pkg/ecco/cost_averagesfields.F
49    
50    ##########################################################################
51    ##########################################################################
52    # Get forcing files, etc.
53    # Example below is for cube46 on /nobackup2a/menemenl
54    
55    cd /nobackup2a/menemenl
56    mkdir cube47
57    cd cube47
58    ln -sf ../run_template .
59    ln -sf ../ncep_rgau .
60    
61    
62  ##########################################################################  ##########################################################################
63  ##########################################################################  ##########################################################################
64  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
 #  
65    
66    bash or sh shell:    bash or sh shell:
67      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
# Line 44  cvs co MITgcm/verification/tutorial_held Line 84  cvs co MITgcm/verification/tutorial_held
84    
85  ##########################################################################  ##########################################################################
86  ##########################################################################  ##########################################################################
87    # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
88    
89    cd MITgcm/verification/global_ocean.cs32x15/code
90    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
91    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
92    \cp SIZE.h_216 SIZE.h
93    \cp packages.conf_hr packages.conf
94    
95    cd ../build
96    \rm *
97    ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
98    make depend
99    make -j
100    
101    cd ..
102    mkdir run
103    cd run
104    \rm *
105    \cp ../input/* .
106    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
107    ln -sf ../../../../run_template/* .
108    \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
109    \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
110    ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
111    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
112    \cp ../build/mitgcmuv .
113    qsub job_altix
114    
115    
116    ##########################################################################
117    ##########################################################################
118  # 32*32*6*15, 1-cpu cube sphere  # 32*32*6*15, 1-cpu cube sphere
119    
120  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
121  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
122  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
123    \rm CPP_EEOPTIONS.h
124  cd ../build  cd ../build
125  \rm *  \rm *
126  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
# Line 69  comparison output is in: Line 141  comparison output is in:
141  to use matlab to look at the output  to use matlab to look at the output
142  matlab  matlab
143    
144  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
145           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
146      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
147      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
148  end  end
149    
150  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
151  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
152  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
153  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
154  clf  clf
155  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
156  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
# Line 87  subplot(224), mypcolor(vice(:,:,6)'); co Line 159  subplot(224), mypcolor(vice(:,:,6)'); co
159    
160    
161  ##########################################################################  ##########################################################################
 ##########################################################################  
 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
   
 cd MITgcm/verification/global_ocean.cs32x15/code  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
   
 cd ../build  
 \rm *  
 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  
 make depend  
 make -j  
   
 cd ..  
 mkdir run  
 cd run  
 \rm *  
 \cp ../input/* .  
 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  
 ln -sf ../../../../run_template/* .  
 \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin  
 \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  
 ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  
 ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216  
 \cp ../build/mitgcmuv .  
 qsub job_altix  
   
   
 ##########################################################################  
162  ##########################################################################  ##########################################################################
163  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment  # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
164    
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